Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23f09
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1367 + 26072270-26072374,26074047-26074724 52 2e-07
01_06_1664 - 38984545-38984615,38984706-38984802,38985362-389855... 50 1e-06
08_02_0773 + 21043553-21043813,21044775-21045203 42 3e-04
07_03_1364 + 26044559-26044672,26045732-26046334 42 3e-04
07_03_1369 + 26087947-26088039,26088396-26089073 31 0.59
05_03_0653 + 16617121-16617359,16618892-16618955,16619455-166194... 29 1.8
03_06_0125 + 31850858-31850905,31851032-31851109,31851221-318513... 29 2.4
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 27 9.6
>07_03_1367 + 26072270-26072374,26074047-26074724
Length = 260
Score = 52.4 bits (120), Expect = 2e-07
Identities = 27/79 (34%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Frame = +1
Query: 238 EWDFLIFTQHWPATICRIWMEKPTHSCIM-PHEQNSWTIHGIWPNKNHSM-GPFF---CN 402
E+DF+ Q WP + C TH C++ P + +TIHG+WP+ N + G + CN
Sbjct: 26 EFDFMYLAQQWPDSYCS------THKCLVKPPPPSHFTIHGLWPSYNKLIDGKMWLEDCN 79
Query: 403 KTWSFDPDQVKSIETDLEE 459
K DP Q++ +E L++
Sbjct: 80 KEDPLDPTQIQDLEKQLDQ 98
>01_06_1664 -
38984545-38984615,38984706-38984802,38985362-38985523,
38985736-38985825,38986125-38986226,38986373-38986446,
38986587-38986615,38986766-38986989
Length = 282
Score = 49.6 bits (113), Expect = 1e-06
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Frame = +1
Query: 229 KNNEWDFLIFTQHWPATICRIWMEK-PTHSCIMPHEQNSWTIHGIWPNKNHSMGPFFCNK 405
K E+D+ WP TIC + C ++TIHG+WP+ + P C
Sbjct: 43 KQREFDYFALALQWPGTICASTRHCCAINGCCRSEPLQTFTIHGLWPDYDDGTWPACCRH 102
Query: 406 TWSFDPDQVKSIETDLEE 459
T SFD D++ ++ LE+
Sbjct: 103 T-SFDMDKILPLKPTLEK 119
>08_02_0773 + 21043553-21043813,21044775-21045203
Length = 229
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Frame = +1
Query: 238 EWDFLIFTQHWPATICRIWMEKPTHSCIMPHEQN---SWTIHGIWPNKNHSMGPFFCNKT 408
++DF WP + C SC P + IHG+WPN++ P C+
Sbjct: 26 DYDFFFLVLQWPGSYC-----DTKQSCCYPRSGKPAADFGIHGLWPNRDDGSYPQNCDPD 80
Query: 409 WSFDPDQVKSI 441
FDP +V +
Sbjct: 81 SEFDPSKVSDL 91
>07_03_1364 + 26044559-26044672,26045732-26046334
Length = 238
Score = 41.5 bits (93), Expect = 3e-04
Identities = 20/74 (27%), Positives = 37/74 (50%)
Frame = +1
Query: 238 EWDFLIFTQHWPATICRIWMEKPTHSCIMPHEQNSWTIHGIWPNKNHSMGPFFCNKTWSF 417
++DF+ F Q W + C + + +P N++TI G+WP+ P +CN +
Sbjct: 29 KFDFMYFVQQWAPSYCSTAPHECEYEPRLP--PNNFTIRGLWPS-YEEWRPEYCNISDRL 85
Query: 418 DPDQVKSIETDLEE 459
DP Q++ + L +
Sbjct: 86 DPGQIQDLVKPLNQ 99
>07_03_1369 + 26087947-26088039,26088396-26089073
Length = 256
Score = 30.7 bits (66), Expect = 0.59
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = +1
Query: 235 NEWDFLIFTQHWPATICRIWMEKPTHSCIMPHEQN---SWTIHGIWPN 369
+E+DF Q WP + C C P + IHG+WPN
Sbjct: 21 DEFDFFYLVQQWPGSFC-----DTQAGCCFPDTGKPAAEFGIHGLWPN 63
>05_03_0653 +
16617121-16617359,16618892-16618955,16619455-16619485,
16619577-16619848,16620528-16620633,16620715-16620872,
16621527-16621714,16621786-16621855,16622814-16622984,
16624363-16624838,16625625-16625871,16626158-16626490,
16627329-16627412,16627751-16627843,16627966-16628025,
16628582-16628680,16628830-16628970,16629207-16629287,
16629895-16629966,16631160-16631231,16632083-16632176,
16632257-16632339,16632455-16632532,16632914-16632970,
16633055-16633132,16633236-16633357,16633463-16633623,
16634419-16634495,16634570-16634683,16634857-16634958,
16635368-16635436,16635437-16635577,16635936-16636109,
16636934-16637063,16637137-16637276,16637369-16637446,
16637813-16637911,16638408-16638803
Length = 1749
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = +1
Query: 163 WRNLSYAIFLLSCFTYAELSDTKNNE-----WDFLIFTQH 267
W + SY + + C Y ++S K++E WDFLI ++H
Sbjct: 490 WESFSYEVEKI-CAKYGQISPAKSSESPCTAWDFLINSKH 528
>03_06_0125 +
31850858-31850905,31851032-31851109,31851221-31851337,
31851346-31851642,31852498-31852509,31852737-31852822,
31853516-31853660,31853767-31853862,31854333-31854424,
31854696-31854797,31854891-31855037,31855116-31855266,
31855418-31855480,31855570-31855806,31856081-31856185,
31856263-31856376,31856459-31857037,31857279-31857286,
31857858-31858004,31858077-31858203
Length = 916
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +2
Query: 254 YSRNTGRRLYAEYGWRNLRTLVLCHTSRIHGLFMVYGQIKITPWDHFSVIRLGHLT 421
YSRN + + W + R C +HGL +V G+I I+ +++ + HLT
Sbjct: 812 YSRNGDSLVQIKDSWTHGRWAQACV---VHGLLVVAGRISISSGSFNNLLGVTHLT 864
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Frame = +2
Query: 296 WRNLRTLVLCHTSRIHGLFMVYGQIKIT----PWDHFSVI 403
W L T +LC +I+G +M GQ +++ P +H SV+
Sbjct: 371 WYALMTPILCMELKIYGQWMSGGQRRLSKVANPSNHLSVV 410
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,042,795
Number of Sequences: 37544
Number of extensions: 240065
Number of successful extensions: 512
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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