Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23f09
(460 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF067944-4|AAC17670.2| 279|Caenorhabditis elegans Hypothetical ... 61 3e-10
Z77659-8|CAB01170.1| 958|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z77657-11|CAB01153.1| 958|Caenorhabditis elegans Hypothetical p... 29 1.6
Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF295093-1|AAG03081.1| 958|Caenorhabditis elegans bimC kinesin ... 29 1.6
AB024428-1|BAC19818.1| 958|Caenorhabditis elegans kinesin like ... 29 1.6
U00050-6|AAM22064.1| 208|Caenorhabditis elegans Hypothetical pr... 29 2.1
U00050-5|AAM22063.1| 291|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr... 28 2.8
DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein. 27 6.6
DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-couple... 27 6.6
AF077530-2|AAC26265.1| 436|Caenorhabditis elegans Hypothetical ... 27 6.6
AF026211-1|AAB71293.2| 600|Caenorhabditis elegans Sodium:neurot... 27 6.6
Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z37092-1|CAA85452.1| 183|Caenorhabditis elegans Hypothetical pr... 27 8.7
>AF067944-4|AAC17670.2| 279|Caenorhabditis elegans Hypothetical
protein K10C9.3 protein.
Length = 279
Score = 61.3 bits (142), Expect = 3e-10
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Frame = +1
Query: 184 IFLLSCFTYAELSDTKNNE-WDFLIFTQHWPATICRIWMEKPTHSCIMPHEQNSWTIHGI 360
+ LL C + L+ + + E +D+L+FT +P +CR + SC +P W+IHG+
Sbjct: 3 LLLLLCISCIPLAYSHDGEPFDYLMFTTIYPTAVCRADDDSVPESCEIPSGTPQWSIHGL 62
Query: 361 WPNKNHSMGPFFCNKT-WSFDPDQVKSIETDL 453
WPN + P C T FD + +KSIE L
Sbjct: 63 WPNFENGSYPQNCRGTPRHFDENLIKSIEDRL 94
>Z77659-8|CAB01170.1| 958|Caenorhabditis elegans Hypothetical
protein F23B12.8 protein.
Length = 958
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 299 RNLRTLVLCHTSRIHGLFMVYGQIKITPWDHFSVIRLGHLTLIKL 433
R TL+ H+SR H LFMV I+ +++ G L L+ L
Sbjct: 208 RTAATLMNMHSSRSHSLFMVNVVIRENTTTGEELVKQGKLNLVDL 252
>Z77657-11|CAB01153.1| 958|Caenorhabditis elegans Hypothetical
protein F23B12.8 protein.
Length = 958
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 299 RNLRTLVLCHTSRIHGLFMVYGQIKITPWDHFSVIRLGHLTLIKL 433
R TL+ H+SR H LFMV I+ +++ G L L+ L
Sbjct: 208 RTAATLMNMHSSRSHSLFMVNVVIRENTTTGEELVKQGKLNLVDL 252
>Z72507-8|CAA96632.1| 1101|Caenorhabditis elegans Hypothetical
protein F17C11.10 protein.
Length = 1101
Score = 29.1 bits (62), Expect = 1.6
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = +1
Query: 292 WMEKPTHSCIMPHEQNSWTIHGIWPNKNHSMGPF 393
W+ P+ C+ + +N W G++ K+H+ F
Sbjct: 215 WLFVPSKGCVKSYRRNGWEESGVYRLKDHASVDF 248
>AF295093-1|AAG03081.1| 958|Caenorhabditis elegans bimC kinesin
BMK-1 protein.
Length = 958
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 299 RNLRTLVLCHTSRIHGLFMVYGQIKITPWDHFSVIRLGHLTLIKL 433
R TL+ H+SR H LFMV I+ +++ G L L+ L
Sbjct: 208 RTAATLMNMHSSRSHSLFMVNVVIRENTTTGEELVKQGKLNLVDL 252
>AB024428-1|BAC19818.1| 958|Caenorhabditis elegans kinesin like
protein KLP-14 protein.
Length = 958
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = +2
Query: 299 RNLRTLVLCHTSRIHGLFMVYGQIKITPWDHFSVIRLGHLTLIKL 433
R TL+ H+SR H LFMV I+ +++ G L L+ L
Sbjct: 208 RTAATLMNMHSSRSHSLFMVNVVIRENTTTGEELVKQGKLNLVDL 252
>U00050-6|AAM22064.1| 208|Caenorhabditis elegans Hypothetical
protein F09F7.7b protein.
Length = 208
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 208 YAELSDTKNNEWDFLIFTQHWPATICRIWMEKPTHSCIMPHEQNSWTIHGIWPNK 372
YA++ K +E+D + P +C + E+ S I H+ + W IW N+
Sbjct: 144 YADMLLNKMSEYDVKKLGNYQPFEMCNLEYEEVKKSAIEMHQDDMW----IWGNR 194
>U00050-5|AAM22063.1| 291|Caenorhabditis elegans Hypothetical
protein F09F7.7a protein.
Length = 291
Score = 28.7 bits (61), Expect = 2.1
Identities = 15/55 (27%), Positives = 26/55 (47%)
Frame = +1
Query: 208 YAELSDTKNNEWDFLIFTQHWPATICRIWMEKPTHSCIMPHEQNSWTIHGIWPNK 372
YA++ K +E+D + P +C + E+ S I H+ + W IW N+
Sbjct: 144 YADMLLNKMSEYDVKKLGNYQPFEMCNLEYEEVKKSAIEMHQDDMW----IWGNR 194
>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical
protein F55H12.3 protein.
Length = 2972
Score = 28.3 bits (60), Expect = 2.8
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 166 RNLSYAIFLLSCFTYAELSDTKNNEWDFLIFTQHWPATICRI 291
RN + +I +LS SDT + +F I+ Q A++C I
Sbjct: 371 RNATSSIMILSSSFVLTASDTDTRKTEFQIYYQEADASLCNI 412
>DQ482733-1|ABF20556.1| 600|Caenorhabditis elegans SNF-3 protein.
Length = 600
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 270 PVLREY*KIPLIIFCVA*FCI 208
P+LR+Y K L IFC+ FCI
Sbjct: 411 PILRKYKKQSLGIFCLFFFCI 431
>DQ118731-1|AAZ23105.1| 600|Caenorhabditis elegans sodium-coupled
betaine transporterprotein protein.
Length = 600
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 270 PVLREY*KIPLIIFCVA*FCI 208
P+LR+Y K L IFC+ FCI
Sbjct: 411 PILRKYKKQSLGIFCLFFFCI 431
>AF077530-2|AAC26265.1| 436|Caenorhabditis elegans Hypothetical
protein C40D2.2 protein.
Length = 436
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 302 NLRTLVLCHTSRIHGLFMVYGQIKITPWD 388
N R+LVL T+R+ YG +K+ WD
Sbjct: 349 NGRSLVLLKTTRVFNKATGYGWLKLIRWD 377
>AF026211-1|AAB71293.2| 600|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 3
protein.
Length = 600
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2
Query: 270 PVLREY*KIPLIIFCVA*FCI 208
P+LR+Y K L IFC+ FCI
Sbjct: 411 PILRKYKKQSLGIFCLFFFCI 431
>Z81067-5|CAD92378.1| 965|Caenorhabditis elegans Hypothetical
protein F23A7.7 protein.
Length = 965
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -2
Query: 147 SIFYISALNFSYIYHSLQKNLK*NLY 70
S+F IS F Y YH++Q+ L +Y
Sbjct: 588 SLFPISTQWFEYFYHTIQRTLVPEIY 613
>Z37092-1|CAA85452.1| 183|Caenorhabditis elegans Hypothetical
protein F44F4.1 protein.
Length = 183
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +2
Query: 188 FCCRVLHMQN*ATQKIMSGIF*YSRNTGRRLYAEYGWRNLRTLVLCHTSRIHGLFMVYG 364
FCC + N ATQ ++ I+ + + R+ YG+ L++ + + L +++G
Sbjct: 128 FCCCKENKCNVATQTELNSIYSMNSRSARKTNGSYGY----PLIILNVISVFALALIFG 182
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,265,956
Number of Sequences: 27780
Number of extensions: 246972
Number of successful extensions: 580
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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