Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23f09
         (460 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   1.2  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   2.8  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.4  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   6.4  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   6.4  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   8.5  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 39  NVF*NDLNNSHINF 80
           NV  NDLN  H+NF
Sbjct: 385 NVLNNDLNLEHVNF 398


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = +3

Query: 255 IHATLAGDYMQNMDGETYALLYYATRAEFMDYSWYM 362
           ++   +  YM+  +   Y L Y+    E   Y +YM
Sbjct: 202 VNTNYSSKYMREYNDPEYKLDYFMEDVELNAYYYYM 237


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 405 LITEKWSHGVIFIWPYTMNSP*IL 334
           LI E W+H V+ +  Y    P IL
Sbjct: 158 LIFESWTHNVLDMVLYWDQEPIIL 181


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 263 CVNIRKSHSLFFVSLS 216
           C+NI  S ++FF+ +S
Sbjct: 270 CINILLSQTMFFLLIS 285


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -1

Query: 46 NTLSTYIYMYH 14
          N+L T+IY YH
Sbjct: 49 NSLMTHIYTYH 59


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 183 SITQISPHFYK*SIFYISALNFSYIYHSLQKN 88
           S+ Q  P+F    +  I+ALN  +   +L +N
Sbjct: 70  SLWQPDPYFLNAKVSEIAALNHKFSSVTLYRN 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,350
Number of Sequences: 438
Number of extensions: 2773
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)