Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23f08
         (418 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   0.88 
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    25   3.6  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   4.7  
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy...    25   6.2  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   6.2  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    24   8.2  
SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr 1|||...    24   8.2  

>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.5 bits (58), Expect = 0.88
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = +1

Query: 7   RFHSANANRIKMFPLRRVVGNXILEQWRSQATXAVG--AKTXMKAYSTE-VTPRPLTMLT 177
           R +  N NR  +  L   V      QWRSQ    +   AKT  + + T+ +  RPL +  
Sbjct: 35  RKYDLNINRDSLQELASFVSKKCGSQWRSQCEPLLDEIAKTWKRVHETQPIVTRPLLIPV 94

Query: 178 EXELAMRETIR 210
              L +   +R
Sbjct: 95  LANLNVPHEVR 105


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 3.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 139 STEVTPRPLTMLTEXELAMRETIRKLXTEQISPLVKKMEDEXR 267
           ST   PRP   LTE +   R       T  IS ++K + ++ +
Sbjct: 559 STGPRPRPTFQLTEIDSPNRRRASDCITPSISKILKMVSEDAK 601


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 394 LETVLPPPTSLSGNCSRNRCILPE 323
           LE +   PT L G   R R +LPE
Sbjct: 745 LELIKASPTELPGGIPRKRRVLPE 768


>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 465

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
 Frame = -2

Query: 312 HQPI---IKQHLS--DTIIDAXFIFHFLHKRTYL 226
           HQP+   +    S  DT+I     F F HK TYL
Sbjct: 243 HQPVRVAVSSKFSTVDTLIQRYLFFPFKHKDTYL 276


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 24.6 bits (51), Expect = 6.2
 Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = -3

Query: 392 RDSSSTTNIIVR--KLQPEPLYSTGVXMPINP 303
           RD+ +   ++++  +LQPEPL+  GV   + P
Sbjct: 688 RDAKTMPPLLLKLSELQPEPLHYVGVSYGLTP 719


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 404 AGSTRDSSSTTNIIVRKLQPE 342
           +G T   SST+NI + K +PE
Sbjct: 2   SGQTETLSSTSNIPIAKAEPE 22


>SPAC1F12.06c |||endonuclease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 252

 Score = 24.2 bits (50), Expect = 8.2
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -2

Query: 324 SXDAHQPIIKQHLSDTIIDAXFIFHFLHKRTYLFG 220
           S DAH+  +K+H+     D   + H + + + + G
Sbjct: 154 SLDAHRETLKKHVLKKTTDHPILIHSIDQSSEILG 188


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,599
Number of Sequences: 5004
Number of extensions: 33230
Number of successful extensions: 108
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)