Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23f08
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0195 - 1409820-1409966,1410304-1410360,1410774-1410828,141...    37   0.006
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266...    29   1.5  
10_04_0022 + 7687383-7687670,7688479-7688556,7689456-7689535,768...    29   2.0  
02_01_0566 - 4144104-4144230,4144492-4144649,4145770-4146885           29   2.0  
02_05_0400 + 28671562-28672219,28672365-28672441,28673679-286737...    27   4.6  
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515     27   6.0  
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502...    27   8.0  

>05_01_0195 -
           1409820-1409966,1410304-1410360,1410774-1410828,
           1410902-1411002,1411051-1411205,1411395-1411459,
           1411545-1411595,1411817-1411893,1412153-1412262,
           1412355-1412403,1412528-1412572,1412689-1412813,
           1413087-1413228,1413336-1413446
          Length = 429

 Score = 37.1 bits (82), Expect = 0.006
 Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +1

Query: 196 RETIRKLXTEQISPLVKKMEDEXRI--DDGIRQMLFDNGLMGIXTPVEYSGSGCNFLTMM 369
           +E++ K   E I+P    ++       D  + +++ D  L G+  P EY G G  ++   
Sbjct: 39  KESVHKFAQETIAPHAAAIDASNHFPKDVNLWKLMGDFNLHGLTAPEEYGGMGLGYMYHC 98

Query: 370 LVVEELSRVDPAV 408
           + +EE+SR   +V
Sbjct: 99  IAMEEISRASGSV 111


>06_02_0283 +
           13726047-13726090,13726160-13726266,13726515-13726621,
           13726735-13726812,13734948-13735071,13735585-13735658,
           13735742-13735801,13737561-13737670,13737806-13737965,
           13738218-13738360,13738461-13738605,13738727-13738819,
           13740070-13740186
          Length = 453

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/83 (20%), Positives = 40/83 (48%)
 Frame = +1

Query: 169 MLTEXELAMRETIRKLXTEQISPLVKKMEDEXRIDDGIRQMLFDNGLMGIXTPVEYSGSG 348
           +LTE E  ++  +R+    +++P++ K  ++      +   +   G+ G  T   Y   G
Sbjct: 60  LLTEEEKDLQIKVRQFMENEVAPIISKFWEKAEFPFHLIPKMSTLGIAG-GTIKGYGCPG 118

Query: 349 CNFLTMMLVVEELSRVDPAVAAY 417
            +     +   E++RVD ++A++
Sbjct: 119 LSGPACAMCFLEIARVDASIASF 141


>10_04_0022 +
           7687383-7687670,7688479-7688556,7689456-7689535,
           7689876-7690095,7690444-7690677
          Length = 299

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
 Frame = +1

Query: 172 LTEXELAMR--ETIRKLXTEQISPLVKKMEDEXRIDDGIRQMLFD 300
           L E ELA R  E+IRK   ++++    K E + R+++GI+Q LFD
Sbjct: 158 LLEEELARRVEESIRKNVEDRLNSEDIKNEIKRRVEEGIKQ-LFD 201


>02_01_0566 - 4144104-4144230,4144492-4144649,4145770-4146885
          Length = 466

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 409 PRLGPLETVLPPPTSLSGNCSR 344
           P+ GP+ + +PPP S SGN  R
Sbjct: 57  PKSGPVFSAIPPPKSSSGNPKR 78


>02_05_0400 +
           28671562-28672219,28672365-28672441,28673679-28673730,
           28673851-28674008
          Length = 314

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -2

Query: 411 GHGWVHSRQFFHHQHH 364
           GHG  H     HHQHH
Sbjct: 83  GHGHGHGHHHHHHQHH 98


>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
          Length = 785

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 336 VFYRSXDAHQPIIKQHLSDTIIDAXFIFHFLHK 238
           VFY    + Q  I+Q LSD + D   +F+F  K
Sbjct: 288 VFYTEVFSGQQYIQQGLSDGLPDVDAVFYFTRK 320


>03_05_0293 +
           22849103-22849513,22849670-22849756,22850156-22850284,
           22850507-22851262,22853474-22854250
          Length = 719

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 10/12 (83%), Positives = 12/12 (100%)
 Frame = -1

Query: 265 GVHLPFSSQADL 230
           G+HLPFSS+ADL
Sbjct: 375 GLHLPFSSEADL 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,569,892
Number of Sequences: 37544
Number of extensions: 249003
Number of successful extensions: 668
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)