Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23f08
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   0.79 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   1.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   2.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   2.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   3.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.7  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.7  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.7  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   9.7  

>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.8 bits (49), Expect = 0.79
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -2

Query: 153 GNFCAVCFHXSLCSNGXRC 97
           GN  +   H ++CSNG  C
Sbjct: 362 GNILSPSIHDNICSNGWIC 380


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = -2

Query: 378 HHQHHCQEI 352
           HH HHC EI
Sbjct: 471 HHWHHCPEI 479


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 368 CWWWKNCLEWTQP 406
           C WWK C   T P
Sbjct: 488 CCWWKICWTITTP 500


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 368 CWWWKNCLEWTQP 406
           C WWK C   T P
Sbjct: 541 CCWWKICWTITTP 553


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = -2

Query: 411 GHGWVHSRQFFHHQH 367
           GH  +H+    HH H
Sbjct: 422 GHSHIHATPHHHHSH 436


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +3

Query: 45  PITTRCWQPDFR 80
           P+   CW  DFR
Sbjct: 387 PVIYACWSRDFR 398


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -2

Query: 387 QFFHHQHHCQEIAAGTAVFYRSXDAHQPIIKQHLS 283
           +F +  HH  +I      F    D   P+I  H +
Sbjct: 131 EFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFA 165


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -2

Query: 387 QFFHHQHHCQEIAAGTAVFYRSXDAHQPIIKQHLS 283
           +F +  HH  +I      F    D   P+I  H +
Sbjct: 131 EFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFA 165


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -2

Query: 387 QFFHHQHHCQEIAAGTAVFYRSXDAHQPIIKQHLS 283
           +F +  HH  +I      F    D   P+I  H +
Sbjct: 182 EFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFA 216


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -2

Query: 387 QFFHHQHHCQEIAAGTAVFYRSXDAHQPIIKQHLS 283
           +F +  HH  +I      F    D   P+I  H +
Sbjct: 131 EFLNAIHHYDDIWLPDTYFIMHGDFKDPLIPVHFA 165


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/17 (41%), Positives = 8/17 (47%)
 Frame = -2

Query: 207 YCFPHGEFXFSQHGQRS 157
           Y  PH  F +  HG  S
Sbjct: 606 YAAPHKAFTYRMHGYAS 622


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,200
Number of Sequences: 438
Number of extensions: 2490
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)