Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23f03
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   1.2  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    28   1.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    27   2.2  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    27   2.2  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   3.8  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   3.8  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    26   5.0  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    26   5.0  
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha...    25   6.6  
SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|...    25   6.6  
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual      25   6.6  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   6.6  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    25   6.6  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   8.8  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    25   8.8  

>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 133 SFSGSSKTFESLLKEIFSASLGLSVEENSEWNGLLITDP 249
           SF  S    +SLL E+FSA LG    +++ WN LL   P
Sbjct: 32  SFLWSESAKKSLLNEVFSALLGY---DHTLWNTLLPERP 67


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
 Frame = -3

Query: 254 LNGSVINNPFHSEFSSTE-RPREAENISFKRLSKVLLEPEKLNDSGLW---RMLSSPEAL 87
           L G  ++NPF S+F + E R  EAE I  ++    +   ++  ++ +W   RM++S  + 
Sbjct: 298 LLGDEVHNPF-SDFETVEDRAHEAEFIEKQKKHLSIEASDRFKENSMWEKNRMITSGVSK 356

Query: 86  IPIIE 72
            P +E
Sbjct: 357 APGLE 361


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 247  DQLSIIHSIRSSLQRKGQEKQKIFLLKDSRKFYWNQRNLTTQDYG 113
            DQL++     + ++    E Q    LK+SR  Y+N+ +L T  +G
Sbjct: 1126 DQLNLSVQRSALIKAAFPESQSNANLKNSRGIYYNEHDLVTDIFG 1170


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = +1

Query: 166 LLKEIFSASLGLSVEE---NSEWNGLLITDPFNTPEAVVEVYISGISS-LGSSADFKSKK 333
           LL+    A L  ++E    +++   L+ TD  +    ++ VY   IS  L  S     + 
Sbjct: 425 LLQHPLFAPLSHAIESLYGSTDAEALVATDEQDILMILICVYCLSISEKLPFSISMLVEG 484

Query: 334 YPLVVDEYEPDTFDVLKHRINQRFTN 411
           YP V +    + F++L     Q+FTN
Sbjct: 485 YPAVANPEGVEVFEILDEMFFQQFTN 510


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 124 ESLSFSGSSKTFESLLKEIFSASLGLSVEENSE 222
           E L  SGS K FE+ +   F+  L + V +N E
Sbjct: 119 ELLKKSGSYKGFEAFVNRTFAVLLRIVVNDNEE 151


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 115 HSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGL 234
           +  +S S +GS +  E     +F    GL  E   EWNG+
Sbjct: 321 YQEDSASEAGSIED-EQATDNVFGFGKGLEQENEEEWNGI 359


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 340 LVVDEYEPDTFDVLKHRINQRFTNGGNKLVNINLS 444
           L +DE +P T      RI  R +NGG  ++ +NLS
Sbjct: 330 LQIDENKPTT------RIQVRLSNGGRTVLTVNLS 358


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +1

Query: 346 VDEY-EPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQ 522
           V E+ + ++FD      ++ F    N  +N   S  + LLSY+ VLG      ++   L 
Sbjct: 364 VSEFVDENSFDSSSSCSSKVFLTTRNNSINSEDSAHEVLLSYNRVLGS----DIQGTILD 419

Query: 523 HLKSSVEEDFQFLSELAA 576
            +K   + D Q  SEL +
Sbjct: 420 RVKKGYQFDSQKNSELVS 437


>SPAC23E2.03c |ste7||meiotic suppressor protein
           Ste7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
 Frame = +1

Query: 88  NASGELSILHSPESLSFSGSSKTFESLLKEIFSASLGLSVEENSEWNGL-LITDPFNTPE 264
           ++SG+ S L    +LSFS S  T E    ++ +    +S    S  N L L T P     
Sbjct: 466 SSSGDFSALSCHRNLSFSESLPTAED---QVHNNHCAVSPSRRSSSNALYLATLPMGYER 522

Query: 265 AVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQ 399
           +    Y S  S      D    + P  ++      FDVL + + Q
Sbjct: 523 SNSVSYCSDSSLSSPLPDDNMLQDPHALNMAYAKEFDVLINEVLQ 567


>SPCC777.04 |||amino acid transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 85  INASGELSILHSPESLSFSGSSKTFESLLKEIFSAS-LGLSVEENSEWNGLLITDPF 252
           INA   + I+ S  S  + GS +T  +L KE ++   L L  ++   W G L+T  F
Sbjct: 337 INACLLVFIISSANSDIYIGS-RTLYALAKEGYAPKILMLQTKQGIPWVGCLVTSSF 392


>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +1

Query: 106 SILHSPE-SLSFSGSSKTFESLLKEIFSASLGLSVEENSEW 225
           S + SPE +L  S S+ TF+SL KE+      L+  ++ E+
Sbjct: 93  SNVSSPEKTLLTSASTSTFDSLKKELLPELPSLAYSDDDEF 133


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +1

Query: 307 SSADFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNKLVNI 435
           ++  ++  KY L    +   TFD+L H + +  +NGG+ ++ +
Sbjct: 139 TAQQYRQNKYQL---HFSRITFDLLLHFLFENVSNGGSIIIKL 178


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
 Frame = +1

Query: 4   TVSHLLSRKMAATMVSVWVFLISSIIGINASGELSILHSPESLSFSGSSKTFESLLKEIF 183
           T+S  +S     +  S    ++SS     +S  LSI  S  S +FS +S +  S +    
Sbjct: 559 TISSGISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSI 618

Query: 184 SASLGLSVEENSEWNGLLITDP--FNTPEAVVEVYISGISSLGSSADFKSKKYP 339
           S+S  +        + L+I+     +   +++   IS I    S + + S   P
Sbjct: 619 SSSSTILSSPTPSTSSLMISSSSIISGSSSILSSSISTIPISSSLSTYSSSVIP 672


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/61 (26%), Positives = 28/61 (45%)
 Frame = +1

Query: 241 TDPFNTPEAVVEVYISGISSLGSSADFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGN 420
           T  F  P  V   Y   ++ + SSA+ + KK      +  PD  + L+  ++++F  G  
Sbjct: 289 TKTFQVPPEVYAYYKERVA-IASSAEEEYKKMYASYKQSYPDLSNQLERILSRKFPEGWE 347

Query: 421 K 423
           K
Sbjct: 348 K 348


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 33  GCNYGICMGFLNLFNNRYQCLWRTKH 110
           G   G+ +  L +   RY+CLW + H
Sbjct: 245 GLYRGLSVSMLKVAPGRYECLWLSCH 270


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.129    0.352 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,500,787
Number of Sequences: 5004
Number of extensions: 51374
Number of successful extensions: 169
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)