Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23e22
         (444 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0448 - 29100674-29100716,29100821-29100902,29101010-291011...    28   2.9  
06_03_0526 + 21771519-21771607,21771685-21771810,21771890-217720...    27   6.8  
05_05_0221 - 23385626-23386702                                         27   9.0  
03_02_1015 + 13225092-13225625                                         27   9.0  
01_06_0493 + 29773536-29773582,29774209-29774260,29774405-29776405     27   9.0  
01_03_0163 + 13346586-13347809                                         27   9.0  

>02_05_0448 -
           29100674-29100716,29100821-29100902,29101010-29101130,
           29101481-29101546,29101628-29101735,29102083-29102148,
           29102605-29102633,29102773-29102902
          Length = 214

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = -1

Query: 285 PLIPDGDGADVTLCSCGRS*GSNESEDSKENSPHLNFSYNHRFFDDTQKN 136
           P+I  G+  D  +  C          D KE  PH       RFF+D +KN
Sbjct: 129 PMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPH-RLQEIRRFFEDYKKN 177


>06_03_0526 +
           21771519-21771607,21771685-21771810,21771890-21772010,
           21772123-21772851,21772954-21773349,21774594-21774665,
           21774741-21774803,21775236-21775337
          Length = 565

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = +3

Query: 324 TDPGGSGRVNPVLSHGGLLLDRYGEPP 404
           T  G S   +P   HGGLL   YGE P
Sbjct: 185 TSVGASAAADPSPVHGGLLAPVYGEFP 211


>05_05_0221 - 23385626-23386702
          Length = 358

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 14/33 (42%), Positives = 15/33 (45%)
 Frame = +3

Query: 339 SGRVNPVLSHGGLLLDRYGEPPRLXEAILRCCD 437
           S  V   L HG  L   +G    L   ILRCCD
Sbjct: 36  SAAVLEALLHGASLPPAHGGAHALAAEILRCCD 68


>03_02_1015 + 13225092-13225625
          Length = 177

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 348 VNPVLSHGGLLLDRYG-EPPRL 410
           V P +S+GG++LDR    PPRL
Sbjct: 90  VRPFMSNGGMMLDRVPIAPPRL 111


>01_06_0493 + 29773536-29773582,29774209-29774260,29774405-29776405
          Length = 699

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 348 VNPVLSHGGLLLDRYGEPPRLXEAI 422
           ++P L H G ++D YG   RL +A+
Sbjct: 460 IDPWLEHYGCMVDLYGRAGRLDDAV 484


>01_03_0163 + 13346586-13347809
          Length = 407

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +3

Query: 294 GADLLQHDEETDPGGSGRVNPVLSHGGL 377
           G DL Q  E   PGGS  V   + HG L
Sbjct: 163 GLDLQQQQEHVPPGGSDAVVVPVGHGVL 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,766,935
Number of Sequences: 37544
Number of extensions: 179201
Number of successful extensions: 405
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)