Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23e20
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    28   1.0  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    26   4.1  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   4.1  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   9.5  

>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 112 FSLAVIKCCDAEHNE 156
           F LAVIKCCD  H E
Sbjct: 162 FVLAVIKCCDIVHRE 176


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = +1

Query: 124 VIKCCDAEHNEIPCMTYAGGVCRKVGNCPTGTEVTIKGLCPLQQLDDVEC 273
           V+  C      +  +    G+       P GT+ ++KG+ P +QLD + C
Sbjct: 12  VVARCSTTRARVTDIQLPHGLVESPVFMPVGTQASLKGVLP-EQLDALGC 60


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 6/23 (26%), Positives = 15/23 (65%)
 Frame = -1

Query: 173 YVIHGISLCSASQHFITAKLKIT 105
           ++ HG+ +C  S+H + + + +T
Sbjct: 293 FIYHGLPICEKSKHILMSSINLT 315


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = -1

Query: 356 LRIHSIGPCCSLLIKELA*DLGFRT 282
           LR + +GP  ++ +K+L   +G+RT
Sbjct: 61  LRKYGVGPGATIWVKDLGPQIGWRT 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,246,590
Number of Sequences: 5004
Number of extensions: 44681
Number of successful extensions: 90
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)