Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23e20
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817           28   4.1  
12_01_0094 + 736406-736746,736885-736894                               27   9.6  
06_02_0013 - 10581449-10585105                                         27   9.6  
01_06_1715 - 39380739-39381764,39382428-39382504,39382605-393829...    27   9.6  

>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
          Length = 958

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 151 NEIPCMTYAGGVCRKVGNCP 210
           N+ PC  +A G CR+  NCP
Sbjct: 375 NKNPCKFFANGGCRRGQNCP 394


>12_01_0094 + 736406-736746,736885-736894
          Length = 116

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 67  IVMKMLSPNLLLAVIFSLAVIKCCDAEHNEIPCMTYAGGVCRKVGNCPTG 216
           +V+  L   LLLA   +   I C        PC+TYA G       C +G
Sbjct: 6   LVLVALVAALLLAAPHAAVAITCGQVNSAVGPCLTYARGGAGPSAACCSG 55


>06_02_0013 - 10581449-10585105
          Length = 1218

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 52  IYSFGIVMKMLSPNLLLAVIFSLAVIKCCDAEHNEIPCMTYAGGVCRKV 198
           + S   +M +LSP L +  I S AVI C  A+   +    YA G CR +
Sbjct: 311 VASLVTIMLLLSPELSMHGIRSKAVIVCVVADLLGL-IGAYAAGSCRDI 358


>01_06_1715 -
           39380739-39381764,39382428-39382504,39382605-39382991,
           39383045-39383251,39384168-39384273
          Length = 600

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 275 QHSTSSSCCKGQSPFIVTSVPVGQLPTFRQTPPAYVIHGISL 150
           Q ++  S    Q P I+ S  +  LP   +  P+Y +HG+SL
Sbjct: 512 QTNSQGSLRPSQEPSIIGSTELASLP---EDLPSYPLHGVSL 550


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,318,290
Number of Sequences: 37544
Number of extensions: 257743
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)