Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23e17
         (492 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216...    28   4.7  
06_01_0600 + 4332886-4332896,4332968-4333067,4333588-4333664,433...    27   6.2  
05_07_0180 - 28223175-28223536,28223628-28223811                       27   6.2  
08_01_0839 + 8210084-8210341,8210499-8210582,8211345-8211461,821...    27   8.2  
05_06_0020 + 24976990-24977167,24978763-24978874,24979634-249797...    27   8.2  

>02_05_0665 -
           30720842-30721003,30721290-30721448,30721555-30721687,
           30722042-30722227,30722377-30722906
          Length = 389

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -3

Query: 295 CGTCLVSFPANAKVPFLDCNQLSVLYYYRKDLRIWDRCWICSSNIL 158
           C  CL S+   A++  L CN         K LR+   C +C  NIL
Sbjct: 338 CCICLSSYEDGAELSALPCNHHFHWTCITKWLRMHATCPLCKYNIL 383


>06_01_0600 +
           4332886-4332896,4332968-4333067,4333588-4333664,
           4333774-4333835,4334016-4334134,4334237-4334404,
           4335004-4335123
          Length = 218

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 6/20 (30%), Positives = 17/20 (85%)
 Frame = -1

Query: 258 KSLFLIAISYRYCTIIERIC 199
           K +++  +S+++C+++ER+C
Sbjct: 13  KHVYIDRLSFKFCSVVERVC 32


>05_07_0180 - 28223175-28223536,28223628-28223811
          Length = 181

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 328 YFRDCAYLGEVGIQGDERFCLMRTGTYNIFVEYCTCNXKDGCNSSSV 468
           Y+ D A    + + GD+   L R+G YNI VE  T    D C+  ++
Sbjct: 45  YYADWARTRNISV-GDKLMFLYRSGVYNI-VEVPTKELFDACSMRNI 89


>08_01_0839 +
           8210084-8210341,8210499-8210582,8211345-8211461,
           8211850-8211945,8212164-8212427,8212522-8212704
          Length = 333

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 6/22 (27%), Positives = 16/22 (72%)
 Frame = -3

Query: 253 PFLDCNQLSVLYYYRKDLRIWD 188
           P++ CN+ ++++  + D ++WD
Sbjct: 169 PYVACNEFTLMWSLKNDRKVWD 190


>05_06_0020 +
           24976990-24977167,24978763-24978874,24979634-24979722,
           24979801-24979869,24979953-24980082,24980506-24980664,
           24980767-24981127,24981343-24981452,24981753-24981909,
           24983336-24983748,24983828-24984020,24984384-24986198
          Length = 1261

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 169 NCRSSTDPKCADPFDNSTVPITDCNQEKGLSHLPGMK 279
           +   +TD K A+   N   P+T+C  E+ +S +PG K
Sbjct: 700 SAEGTTDAK-ANGTPNKDEPVTNCVAEESVSVMPGTK 735


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,754,312
Number of Sequences: 37544
Number of extensions: 227758
Number of successful extensions: 585
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)