Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23e14
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    27   3.1  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    25   7.1  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    25   9.4  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    25   9.4  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    25   9.4  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    25   9.4  

>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +2

Query: 113 FLSNIATIVDIYYSQNGIRPAVWLGFNIQNN--*EGYKKTV*HNNCFYSLEF 262
           FLS + +I++IY+ +   +  V L F IQ +   +G +     NN  Y+L +
Sbjct: 70  FLSAVDSILEIYFHRERQKEKVHLAFLIQQDDFWKGIRPNPTQNNLKYALSY 121


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 551 FVIRHHDVYGSI*FFQYFVYLYTYVRN 471
           F++ HH+VYGS  F      + T++ N
Sbjct: 533 FLLEHHEVYGSNLFASTTNIMSTFIHN 559


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 504 LKESNGTIDVMMPNYKDFIFVIKRDLID 587
           L E +G  + ++  Y + IF++K+DL++
Sbjct: 502 LLEVSGDEEFVLAAYNELIFIVKKDLMN 529


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +2

Query: 2    IACLLLEHMIXNIGEPFF*SYHNNSAVLKYFERI*QVFLSNIATIVD 142
            IA  +L H++ NIG   F S H  S  + +     QV L  +A  VD
Sbjct: 1117 IAYAVLHHLVSNIGCLGFFSTHYQSLCVDFMHHR-QVRLMQMAAAVD 1162


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 240 IAFIHWNLTRRGFRSIGLSDERTITGDEPKSELLP 344
           I  I W  T    + I  +  R + GDEP+ E  P
Sbjct: 638 IVMIPWCNTTECEKEIKKNSARQVNGDEPEDEKAP 672


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 65  HNNSAVLKYFERI*QVFLSNIATIVDI 145
           H+ SAVL++ +R+      NIA+ VD+
Sbjct: 521 HDGSAVLRFIDRVNFTKNLNIASAVDV 547


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 297 DERTITGDEPKSELLPEGWNDTENYRIRYVLESKLYILHGLNT 425
           +ER ++    K +L+ E  +  EN  +  + + +L  L GLN+
Sbjct: 855 EERIVSVQRKKRQLVKEALDSNENNPLSRLDKEELLYLFGLNS 897


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,484
Number of Sequences: 5004
Number of extensions: 52251
Number of successful extensions: 144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)