Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23e14
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0058 + 8662996-8663826                                           29   3.2  
02_05_1336 + 35773629-35773856,35773931-35774085,35774217-357745...    28   5.6  
06_01_0062 - 529833-530917,531392-531434                               28   7.4  

>10_05_0058 + 8662996-8663826
          Length = 276

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 450 MRSEDLAVTNIGVKIDEILKESNGTI-DVMMPNYKDFIFVIKRDLIDSITDKPTATSETQ 626
           M  E L  + IG  I  + K S+  + D+    YK +  ++   L       PT T+   
Sbjct: 119 MTFETLEASKIGKAISGLRKHSSEQVRDLAAALYKSWKALVDEHLTRKPPAPPTKTASAL 178

Query: 627 TASDHSN 647
            A+DH+N
Sbjct: 179 GAADHAN 185


>02_05_1336 +
           35773629-35773856,35773931-35774085,35774217-35774549,
           35774615-35774927,35776992-35777168,35777281-35777397,
           35777532-35777698,35777800-35778024,35778127-35778448,
           35778542-35778786,35778993-35779131,35779212-35779304,
           35779509-35779577
          Length = 860

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
 Frame = +3

Query: 252 HWNLTRRGFRSIGLSDERTITGDEPKSELLP--EGWNDTENYRIRYVLESKLYILHGLNT 425
           H N+ R  F++    D + +     + ++ P  E +    + +I  +LE K  ++ G  T
Sbjct: 368 HSNILRVPFKT---EDGKVLPQWVSRFDIYPYLERYAQDSSVKILEILEGKPDLVIGNYT 424

Query: 426 DGNLIVNLMRSEDLAVT 476
           DGNL+ +L+ S+ L VT
Sbjct: 425 DGNLVASLLTSK-LGVT 440


>06_01_0062 - 529833-530917,531392-531434
          Length = 375

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 261 LTRRGFRSIGLSDERTITG-DEPKSELLPEGWNDTEN--YRIRYVLES 395
           L R G  S G  DE   T   +P+  L P+GW D E+   R+R++L +
Sbjct: 94  LVRHG-ESEGNVDEAAYTRVPDPRIGLTPQGWRDAEDCGRRLRHLLST 140


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,166,450
Number of Sequences: 37544
Number of extensions: 286285
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)