Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23e12
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr...    28   0.67 
SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr 1...    26   2.7  
SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual    26   3.6  
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc...    25   8.3  
SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyce...    25   8.3  

>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1471

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -3

Query: 119  LHQISRSYLPYLQSITEFNRQFVMKTIWN 33
            LH+I RS+L +L SI    +Q V++ +WN
Sbjct: 1184 LHKI-RSFLVHLLSINSHGKQSVVEDLWN 1211


>SPAC23A1.15c |sec20||SNARE Sec20|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = +2

Query: 224 VFDTALQRFLSMKVT-QFEYFTVNKRTSLFGFFVIVVPMFTFGTLIW 361
           V  T+ +   S+K++ + +YF V    S FGFF+ VV    F  ++W
Sbjct: 172 VLYTSKRIIKSLKLSDRSDYFLV---VSGFGFFIFVVVYLLFKRIVW 215


>SPAC6B12.09 |trm10||tRNA m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 304

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +2

Query: 149 RRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKV 265
           +RAEMRRE  + R    K   EAG V  +  +R    KV
Sbjct: 52  KRAEMRREKKRLRKEERKRKIEAGEVVKSQKKRIRLGKV 90


>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
 Frame = +1

Query: 136 NPSLKAC*NETGVLET-----------KNKPLEKRFGGWLCFRHSIAKVSVHESNTV 273
           N SL A   ETG LE            +N+P  +R  GWL   ++I  V+  + +++
Sbjct: 138 NESLLAVCTETGALELFDSRFYDRQNEENQPSARRIHGWLAHNNAIFSVNFSKDDSL 194


>SPAC140.03 |arb1||argonaute binding protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/60 (25%), Positives = 27/60 (45%)
 Frame = +2

Query: 110 SDAELNLIKTQASRRAEMRREFLKQRTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTV 289
           SD+ +N I++  ++       F     + +       Y+  T   R+L+ KV + EY TV
Sbjct: 252 SDSSVNFIESNNTKFMPNDELFEPDGISRFSTQQARDYIQRTLGPRYLTGKVVEQEYLTV 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,023,927
Number of Sequences: 5004
Number of extensions: 40825
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)