Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23e08
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h at...   129   2e-30
Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical ...    27   7.6  

>AF045642-4|AAK67210.1|  226|Caenorhabditis elegans Vacuolar h
           atpase protein 8 protein.
          Length = 226

 Score =  129 bits (311), Expect = 2e-30
 Identities = 70/146 (47%), Positives = 84/146 (57%)
 Frame = +1

Query: 100 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 279
           +SD DVQKQ++HMMAFIEQ                FNIEKGRLVQQQR KIM        
Sbjct: 3   ISDNDVQKQLRHMMAFIEQEANEKAEEIDAKAEEEFNIEKGRLVQQQRQKIMEFFEKKEK 62

Query: 280 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 459
                  IQ+SN LN  RL+ LK REDH+  VLDEAR  L+ +  D   Y  +L  L++Q
Sbjct: 63  QVELQRKIQASNSLNAGRLRCLKAREDHIGAVLDEARSNLSRISGDAARYPAILKGLVMQ 122

Query: 460 ALFQLMEPTVTIRVRQTDKALVESLL 537
            L QL+E  V +R R+ D  LVE LL
Sbjct: 123 GLLQLLEKEVVLRCREKDLRLVEQLL 148


>Z81071-2|CAB03012.1|  618|Caenorhabditis elegans Hypothetical
           protein F28F8.2 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 385 LHQVHYVRDLHALSVPSDELG 323
           LH++ YV D H + VP D  G
Sbjct: 515 LHKLDYVADAHVVGVPDDRYG 535


>U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical protein
            R02F2.2 protein.
          Length = 1182

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 441  GHTY-CAGSLPAHG-THCHHPRPSNRQGSGGVPARKSS 548
            GH+  C   LP H  +H +HP    ++ S  VPA++SS
Sbjct: 1111 GHSGPCRILLPVHTPSHSNHPSRKQKRSSLNVPAQQSS 1148


>AC006644-5|AAF39834.1|  786|Caenorhabditis elegans Hypothetical
           protein F55A3.2 protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/24 (58%), Positives = 17/24 (70%)
 Frame = +3

Query: 297 EDPIFEHAEPSSSEGTESA*RSRT 368
           E PI E +EP SSE +ES  RSR+
Sbjct: 369 ELPILEVSEPGSSEPSESRTRSRS 392


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,729
Number of Sequences: 27780
Number of extensions: 219422
Number of successful extensions: 672
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)