Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23e02
         (330 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical ...    31   0.20 
U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical pr...    30   0.34 
Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical pr...    29   0.79 
Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical pr...    28   1.4  
AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine r...    27   2.4  
AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical ...    27   4.2  
Z83731-6|CAN86605.2|  208|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z83731-5|CAN86604.2|  223|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical pr...    26   5.5  
Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical pr...    26   5.5  
U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like p...    26   5.5  
AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like ...    26   5.5  
AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like ...    26   5.5  
AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine re...    26   7.3  
U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine rece...    25   9.7  
U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily ass...    25   9.7  

>AC006662-3|AAF39895.1|  368|Caenorhabditis elegans Hypothetical
           protein H23L24.4 protein.
          Length = 368

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 93  IWLLARSKFLIPNILF*YNYSSKCSLKFFYV 1
           +W    SK+L+PN +F Y  SS C+  + +V
Sbjct: 35  LWDRTYSKYLLPNSIFLYKRSSTCTRTYIFV 65


>U41538-5|AAG00012.2|  762|Caenorhabditis elegans Hypothetical
           protein R04E5.2 protein.
          Length = 762

 Score = 30.3 bits (65), Expect = 0.34
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +2

Query: 83  NNQIFKNVAQQRNMSVICTPPRNKVSRGEM-IFLAGLM 193
           N + F+N+ Q+    V+  PP+N  S G + +F AG+M
Sbjct: 572 NPKAFENLIQRNIREVLIVPPKNSTSPGTLNLFEAGVM 609


>Z49907-1|CAA90090.1|  417|Caenorhabditis elegans Hypothetical
           protein B0491.1 protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +3

Query: 219 PGCWSISSIT-ATSNKIITKKYVVYYVL 299
           P CW I++    T NK+ T +Y V+Y++
Sbjct: 311 PFCWFITTFAFVTYNKVCTSQYFVWYIV 338


>Z99282-1|CAB16532.1| 1037|Caenorhabditis elegans Hypothetical
           protein Y70C5A.2 protein.
          Length = 1037

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -1

Query: 153 LFLGGVQITLMFLCWATFLKIWLLA 79
           LFL G+Q+TL+F C+  FL I  LA
Sbjct: 214 LFLLGIQVTLLF-CFLLFLPICFLA 237


>AF098997-10|AAC68712.2|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein43 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 162 LETLFLGGVQITLMFLCWATFLKIWLLARSKFLIPNILF 46
           + T  L G+Q  L+FLC+A   +     +   +IP ILF
Sbjct: 91  ITTHLLLGIQYVLLFLCFARRHQAIAKIKQHHVIPEILF 129


>AF067211-8|ABB51202.1|   99|Caenorhabditis elegans Hypothetical
           protein B0205.13 protein.
          Length = 99

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 226 HPGWDGRPAHHHQAGEEDHLTSGNLVSWRSADNAHVP 116
           HP W+    HHHQ   + H  + N V+ ++A +  +P
Sbjct: 54  HPWWN----HHHQCWHQYHHRTENTVNSQNAPSQVIP 86


>Z83731-6|CAN86605.2|  208|Caenorhabditis elegans Hypothetical
           protein M04C9.1b protein.
          Length = 208

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 196 HHQAGEEDHLTSGNLVSWRSADN 128
           +HQ  E+ +L  GN VS  S DN
Sbjct: 100 YHQKDEKGYLPEGNKVSCESVDN 122


>Z83731-5|CAN86604.2|  223|Caenorhabditis elegans Hypothetical
           protein M04C9.1a protein.
          Length = 223

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 196 HHQAGEEDHLTSGNLVSWRSADN 128
           +HQ  E+ +L  GN VS  S DN
Sbjct: 115 YHQKDEKGYLPEGNKVSCESVDN 137


>Z81053-4|CAB02879.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 181 RRPDGGGLVCHPSL 222
           RRP G GL CHP L
Sbjct: 225 RRPRGFGLTCHPRL 238


>Z78063-7|CAB01506.1|  418|Caenorhabditis elegans Hypothetical
           protein E02A10.1 protein.
          Length = 418

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = +1

Query: 181 RRPDGGGLVCHPSL 222
           RRP G GL CHP L
Sbjct: 225 RRPRGFGLTCHPRL 238


>U61947-10|AAB03132.1|  932|Caenorhabditis elegans Kinesin-like
           protein protein 18 protein.
          Length = 932

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -1

Query: 192 IRPARKIISPLETLFLGGVQITL 124
           +RP+ ++ +P E+LF+GG  +T+
Sbjct: 11  VRPSARLGAPSESLFVGGRVVTI 33


>AY211948-1|AAO34669.1|  932|Caenorhabditis elegans kinesin-like
           protein-18 protein.
          Length = 932

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -1

Query: 192 IRPARKIISPLETLFLGGVQITL 124
           +RP+ ++ +P E+LF+GG  +T+
Sbjct: 11  VRPSARLGAPSESLFVGGRVVTI 33


>AB033538-1|BAB19356.2|  930|Caenorhabditis elegans kinesin like
           protein KLP-18 protein.
          Length = 930

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = -1

Query: 192 IRPARKIISPLETLFLGGVQITL 124
           +RP+ ++ +P E+LF+GG  +T+
Sbjct: 9   VRPSARLGAPSESLFVGGRVVTI 31


>AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein42 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 141 GVQITLMFLCWATFLKIWLLARSKFLIPNIL 49
           GVQ  L+FLC+A   +     + + +IPN L
Sbjct: 98  GVQYVLLFLCFARRHQAIAKIKQQHVIPNFL 128


>U53139-5|AAK18933.2|  322|Caenorhabditis elegans Serpentine
           receptor, class xa protein4 protein.
          Length = 322

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 111 WATFLKIWLLARSKFLIPNILF*YNYSSKCSLKF 10
           W T +K+ L + S  LI  ++    Y S+CSL F
Sbjct: 127 WFTDIKLALYSMSIMLILFVVLLIPYYSECSLNF 160


>U12964-4|AAA91219.3|  447|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 340 protein.
          Length = 447

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -1

Query: 174 IISPLETLFLGGVQITLMFLCWATFLKIWLLARSKFLIPNILF*YNYSS 28
           +++ L  L LG V    +   W T +    LA S +++  +LF +N+SS
Sbjct: 75  LLAVLRMLILGVVYGICLVKQWYT-VAFTTLASSAYILMKVLFYFNHSS 122


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,273,245
Number of Sequences: 27780
Number of extensions: 140890
Number of successful extensions: 356
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 397381406
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)