Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23e01
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0710 + 24492337-24493053 33 0.12
12_02_0065 - 13109652-13110746,13110843-13111762,13139462-131395... 28 3.3
10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408 28 4.4
08_01_1022 + 10323158-10323393,10323486-10323531,10325887-103259... 28 4.4
04_01_0031 + 381389-381841 28 4.4
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722 27 5.8
03_05_0306 - 22956474-22956980 27 5.8
02_02_0379 + 9565001-9565515,9565553-9565833,9565884-9566084,956... 27 5.8
02_01_0302 - 2021221-2023305 27 5.8
04_03_0444 - 16006619-16006733,16006754-16007048,16008265-16008967 27 7.7
>01_05_0710 + 24492337-24493053
Length = 238
Score = 33.1 bits (72), Expect = 0.12
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = -2
Query: 463 RWDIARFTVTSAAICRLEARLRGRISALRVCSTRGIRSSWRVSSTLR 323
R D A F V A +CRLE R ++ALR + GIR+S ++ ++R
Sbjct: 153 RPDSATFAVAVAGLCRLEDP-RNALAALREMAVDGIRTSAKLRESVR 198
>12_02_0065 -
13109652-13110746,13110843-13111762,13139462-13139528,
13139607-13139675,13139877-13140020,13140100-13140171,
13140316-13140387,13140466-13140558,13140655-13140726,
13140809-13140925
Length = 906
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/30 (53%), Positives = 17/30 (56%)
Frame = +1
Query: 265 VPARWTVPARWTVPTXWRLPARWSLPSRRS 354
V A PAR P+ WR P R S PSRRS
Sbjct: 6 VAAAAAAPARSRWPS-WRTPPRSSTPSRRS 34
>10_08_0888 - 21317163-21317687,21318044-21318153,21318258-21318408
Length = 261
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +1
Query: 193 KLEGPTKLREHVSESRRTVPSGRGVPARW 279
+L+GP LR VSES +TV + + +PA W
Sbjct: 221 RLQGPFSLRM-VSESGQTVIAHQVIPANW 248
>08_01_1022 +
10323158-10323393,10323486-10323531,10325887-10325941,
10326027-10326107,10326189-10326400
Length = 209
Score = 27.9 bits (59), Expect = 4.4
Identities = 23/78 (29%), Positives = 36/78 (46%)
Frame = +3
Query: 237 KADRTLRAGRTRKVDRTRKVDRTHXXEVTRKVELTLQEERIPRVEHTRRADMRPLSLASN 416
KA +L AGR ++ R VD L+L EE++ R E +A +RP + +
Sbjct: 66 KAAASLFAGR--QLSRCSGVDPDEHPIKKEFERLSLWEEKLNRFEDWDKAPLRPTTTVNT 123
Query: 417 LHMAALVTVNRAISHRTT 470
AA + ++ H TT
Sbjct: 124 --QAAARFIGHSLPHLTT 139
>04_01_0031 + 381389-381841
Length = 150
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/48 (33%), Positives = 19/48 (39%)
Frame = +1
Query: 235 SRRTVPSGRGVPARWTVPARWTVPTXWRLPARWSLPSRRSVSPGWSIP 378
+R VP R RW P T+ W LP S P + P S P
Sbjct: 59 TRTGVPPPRTRERRWCTPRTSTLRREWALPDTASPPPPLPLEPAPSAP 106
>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
Length = 740
Score = 27.5 bits (58), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 458 GYSPVHXNQRRHMQVGSQAEGAHIRP 381
G + H +QRR Q Q +G H+RP
Sbjct: 156 GRAASHESQRRRQQQQQQLKGRHLRP 181
>03_05_0306 - 22956474-22956980
Length = 168
Score = 27.5 bits (58), Expect = 5.8
Identities = 22/66 (33%), Positives = 28/66 (42%)
Frame = +1
Query: 211 KLREHVSESRRTVPSGRGVPARWTVPARWTVPTXWRLPARWSLPSRRSVSPGWSIPAGRI 390
K +EH + SRR P+ G P RW + R PT W + + S R GW G
Sbjct: 56 KAQEHGAWSRRASPASWGEP-RW-LARRPAFPT-WESSRKEASGSSRPGGMGWQKREGG- 111
Query: 391 CAPSAW 408
P W
Sbjct: 112 -DPGGW 116
>02_02_0379 +
9565001-9565515,9565553-9565833,9565884-9566084,
9566253-9566309,9566955-9567019,9567199-9567420
Length = 446
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 313 WRLPARWSLPSRRSVSPGWSIPAGRICA-PSAWLP 414
+RL RW P R S++P + P + A P A +P
Sbjct: 150 YRLSPRWRSPDRLSITPTTAAPPATVLASPHAPMP 184
>02_01_0302 - 2021221-2023305
Length = 694
Score = 27.5 bits (58), Expect = 5.8
Identities = 19/67 (28%), Positives = 24/67 (35%)
Frame = +1
Query: 202 GPTKLREHVSESRRTVPSGRGVPARWTVPARWTVPTXWRLPARWSLPSRRSVSPGWSIPA 381
G H S T PS P+ T P+ + P P+ S PS + P S P
Sbjct: 476 GKPSTPSHPSPPGSTTPSYPSPPSSSTTPSYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQ 535
Query: 382 GRICAPS 402
PS
Sbjct: 536 STPTHPS 542
>04_03_0444 - 16006619-16006733,16006754-16007048,16008265-16008967
Length = 370
Score = 27.1 bits (57), Expect = 7.7
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Frame = +1
Query: 214 LREHVSESRRTVPSGRGVPARWTV--------PARWTVPTXWRLP-ARWSLPSRRSVSPG 366
L ++++ SR SGR W+ P V LP +R + RRSVSP
Sbjct: 139 LHQYIAISRTLTSSGRVTTTTWSSTSDVAFLPPLPLQVVELRLLPGSRPVIDQRRSVSPT 198
Query: 367 WSIPAGRICAPSAWLPT 417
S +GR+ +AW T
Sbjct: 199 TSTSSGRV-TTTAWFST 214
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,721,516
Number of Sequences: 37544
Number of extensions: 230896
Number of successful extensions: 626
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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