Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23e01
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome re...    29   2.3  
Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical pr...    27   6.9  
U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical pr...    27   9.1  
AF043693-11|AAB97541.2|  213|Caenorhabditis elegans Hypothetical...    27   9.1  

>AF039052-4|AAF98630.1|  981|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 1 protein.
          Length = 981

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 287 GTVHLAGTPRPEGTVRLDSDTCSRNLVGPSSLVFP 183
           G V++AGTP P GT  +      R+L G +S   P
Sbjct: 651 GNVNVAGTPAPTGTPAVAPAAPRRDLPGAASAATP 685


>Z73103-2|CAA97425.2|  400|Caenorhabditis elegans Hypothetical
           protein C08F8.3 protein.
          Length = 400

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +1

Query: 226 VSESRRTVPSGRGVPARWTVPARWTVPTXWRLPARWSLPSRRSVS-PGWSIPAGRICAPS 402
           +SE+R+ +  G  +P+R + P+  TV      PA+  +P+  S   P   +    + APS
Sbjct: 259 ISENRKEINLGLALPSRHSQPSIRTVDVVTTTPAQ-MMPTASSFRIPFAQVSKAPVVAPS 317

Query: 403 AWL 411
           + L
Sbjct: 318 SQL 320


>U23147-2|AAC46688.1|  918|Caenorhabditis elegans Hypothetical
           protein C18H9.3 protein.
          Length = 918

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 267 TRKVDRTRKVDRTHXXEVTRKVELTLQEERIPRVEHTRRADMRPLSLASNLHMAALVTVN 446
           T+      KV+     E T  +E+  +EER  +VE  + A ++    ASN+  AA +  +
Sbjct: 724 TKTAPWAAKVEAPQKSEKTL-LEIQKEEERKFKVEQEKNAKLKAKEQASNITSAAAIAGD 782

Query: 447 RA 452
           ++
Sbjct: 783 KS 784


>AF043693-11|AAB97541.2|  213|Caenorhabditis elegans Hypothetical
           protein C34B2.9 protein.
          Length = 213

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
 Frame = +1

Query: 178 GFGKTKLEGPTKLREHVSESRRTVPSGRGVPARWTVP---ARWTVPTXWRLPARWSLPSR 348
           GFGK  +E  T      + SRR + S    P+   VP   +  T+P     P   +L S 
Sbjct: 87  GFGKRVVESSTSTASSSASSRRPIISSNNPPSSSPVPLHVSSSTIPPPPLPPLPTTLHSN 146

Query: 349 RSVS 360
             +S
Sbjct: 147 SQIS 150


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,253,251
Number of Sequences: 27780
Number of extensions: 194512
Number of successful extensions: 489
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 488
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)