Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23e01
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    27   0.077
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   2.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   2.9  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   8.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.9  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 27.5 bits (58), Expect = 0.077
 Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
 Frame = +3

Query: 237 KADRTLRAGRTRKVDRTRKVDRTHXXEVTRKVELTLQEERIPRVEHTRRAD-MRPLSLAS 413
           + DR  R  R  ++DR   +DRT   +   +++   + +R+ R++ T R D M  ++   
Sbjct: 485 RMDRMDRMDRMDRMDRMDTMDRT---DKMSRIDRMDKIDRMDRMDRTNRMDRMNRMNRQM 541

Query: 414 NLHMAAL 434
           N +M AL
Sbjct: 542 NEYMMAL 548



 Score = 25.8 bits (54), Expect = 0.24
 Identities = 11/51 (21%), Positives = 25/51 (49%)
 Frame = +3

Query: 237 KADRTLRAGRTRKVDRTRKVDRTHXXEVTRKVELTLQEERIPRVEHTRRAD 389
           + +R  R  R  ++DR  ++DR    +   +++   + +RI R++     D
Sbjct: 377 RVNRVNRMDRMDRIDRMDRMDRMDTMDTMDRIDRMDRMDRIDRIDRMHTMD 427



 Score = 24.6 bits (51), Expect = 0.55
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 255 RAGRTRKVDRTRKVDRTHXXEVTRKVELTLQEERIPRVEHTRRAD 389
           R  R  ++DR  ++DR H  +    ++ T +   + R++   R D
Sbjct: 407 RIDRMDRMDRIDRIDRMHTMDTMDTMDRTDKMSSMDRMDRMDRVD 451



 Score = 24.6 bits (51), Expect = 0.55
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +3

Query: 243 DRTLRAGRTRKVDRTRKVDRTHXXEVTRKVELTLQEERIPRVE 371
           DRT +     ++DR  +VDR    + T K+    + +R+ RV+
Sbjct: 433 DRTDKMSSMDRMDRMDRVDRMDTMDRTDKMSSMDRMDRMDRVD 475



 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/48 (22%), Positives = 23/48 (47%)
 Frame = +3

Query: 246 RTLRAGRTRKVDRTRKVDRTHXXEVTRKVELTLQEERIPRVEHTRRAD 389
           R  R  R  ++DR  ++DR    +    ++   + +R+ R++   R D
Sbjct: 374 RMNRVNRVNRMDRMDRIDRMDRMDRMDTMDTMDRIDRMDRMDRIDRID 421



 Score = 21.8 bits (44), Expect = 3.8
 Identities = 10/49 (20%), Positives = 24/49 (48%)
 Frame = +3

Query: 237 KADRTLRAGRTRKVDRTRKVDRTHXXEVTRKVELTLQEERIPRVEHTRR 383
           + +R  R  R  ++DR  ++DR    +    ++   + +R+ R++   R
Sbjct: 374 RMNRVNRVNRMDRMDRIDRMDRMDRMDTMDTMDRIDRMDRMDRIDRIDR 422


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 164 NFNKTASEKLNSKDQPNYESMYQN 235
           N+N   +   N+    NY+ +Y+N
Sbjct: 96  NYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +2

Query: 164 NFNKTASEKLNSKDQPNYESMYQN 235
           N+N   +   N+    NY+ +Y+N
Sbjct: 96  NYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 271 ARWTVPARWTVPT 309
           A+  +P RWT PT
Sbjct: 436 AKKYLPERWTTPT 448


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 335 LHLAGNLXXVGTVH 294
           L LAGN   V TVH
Sbjct: 31  LSLAGNATKVNTVH 44


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 138  FEHREIVSGI 167
            FEHR  +SGI
Sbjct: 986  FEHRHFISGI 995


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,108
Number of Sequences: 438
Number of extensions: 2642
Number of successful extensions: 15
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)