Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23d22
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   1.3  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   1.3  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    27   1.8  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   3.1  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    26   3.1  
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth...    25   7.2  
SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|...    25   9.5  

>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 399 KSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 268
           KS  S +   SG+D  F +  ++ ++++L  GP    SP  S L
Sbjct: 129 KSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +3

Query: 12  LRECLQHRLLVLSSPHLTRTVHSHLKWRNAH 104
           LR  L+H LL   S  L + + S LKWRN H
Sbjct: 365 LRCALRHELL---SAGLQKAIDSLLKWRNRH 392


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 88  SGGTLTNNKEEAHQIVTGKLYAVGSATPPSERRLSVPA-TTIQS 216
           +GGT+TN   E  Q +T  L A  S T P    + +P  +TI S
Sbjct: 324 TGGTVTNTVYEGSQTITSTL-ATASGTVPGTVEVILPGPSTIYS 366



 Score = 24.6 bits (51), Expect = 9.5
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
 Frame = -2

Query: 417 SSIARSKSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL*GFLG--PGS 244
           +++     AF+   P SGS      E   P+   +    +      TS L    G  PG+
Sbjct: 295 TTLQSGSQAFTTTVPASGS-VSGTVEVVQPTGGTVTNTVYEGSQTITSTLATASGTVPGT 353

Query: 243 VSTILCGRAALYGG 202
           V  IL G + +Y G
Sbjct: 354 VEVILPGPSTIYSG 367


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +2

Query: 272 CDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKG-SNSEKADFERAIELT 421
           CD    L+    GSK+          K++  P K  +N+E  D +RAIEL+
Sbjct: 222 CDSCYSLRTKPKGSKSRARNERKFHAKTRKTPSKPVTNNEDEDIKRAIELS 272


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = -3

Query: 281 LHHNCEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPV 135
           LH + ED+ + G FL S A  R+C   +   + +    + L + +  P+
Sbjct: 125 LHASLEDASSVGLFLLSLASERVCFSESANSQEIESIDLGLGSQFGYPI 173


>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
           Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1323

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 258 LGPGSVSTILCGRAALYGGRGDTQTSLTGGSGA 160
           + PGS   +L G A L G  G   +S+  G G+
Sbjct: 436 IAPGSPIIVLGGPALLVGLGGGAASSMNAGEGS 468


>SPBPB10D8.01 |||cysteine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 552

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = -3

Query: 242 FLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTI 129
           ++PS AGG  C+ ++   K   L  + + + + +P  I
Sbjct: 388 YIPSIAGGIACVAMSWDHKIGELAAIIIASNFGIPFII 425


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,315,246
Number of Sequences: 5004
Number of extensions: 49045
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)