Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23d21
         (555 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar...    26   3.2  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   5.7  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   5.7  
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar...    25   5.7  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    25   5.7  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   7.5  
SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces p...    25   7.5  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    25   7.5  
SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD subfamily|Sch...    25   7.5  
SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces p...    25   7.5  
SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe...    25   9.9  

>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = -3

Query: 403 KVRSDSKQLQINSINIDSFGTLTL*NFENLWHFYQYGP*NDADSETFAECGFETWY 236
           +V S +  L + + NI   GTLT  +  ++W+ +     N  +        +  WY
Sbjct: 4   RVVSPNPMLSLETENIAKMGTLTADSLGSMWNVFTKCAENLENGRRLENISWRLWY 59


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 505 TIMEY*SCYHCRLDG*KCSFTPCTEWETHYIAI 407
           T +E    YHC ++G K SFT  +  + H   I
Sbjct: 228 TTLEERKTYHCPMEGCKKSFTRSSALKKHISVI 260


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 362 YGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAM 478
           YGV L   +  A  AY Y MG+P +   E     ++ A+
Sbjct: 309 YGVSLNHSSSKAAIAYMYFMGYPVAENTESITKLLENAL 347


>SPAC17C9.10 |stm1||G-protein coupled receptor
           Stm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +2

Query: 311 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSY-VMGFPFSAWGEGTF 457
           PQI K  ++KS EG++I  ++  L A   N +Y++ ++ FP S +   T+
Sbjct: 195 PQIIKNHKAKSTEGLSI--IFFVL-ASVGNTSYAFSILVFPASDYLNYTY 241


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 90  IFNTCVRIYFYLFLLKHARSFR 25
           IF  CV  Y   F+LKHA+ +R
Sbjct: 217 IFFGCVIGYLLSFILKHAQKYR 238


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2812

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 406  SKVRSDSKQLQINSIN--IDSFGTLTL*NFENLWHFYQYGP*NDADSETFAECGFETWYI 233
            S+ R+  K L +  +N  + +  T  L +FEN     ++ P +  DS +F+      W++
Sbjct: 2358 SRYRAVKKILDLLKVNQGLSNLVTKLLCSFENYVSLAEWNPRSKVDSTSFSRFPGYKWFL 2417


>SPBC1271.03c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 21/71 (29%), Positives = 33/71 (46%)
 Frame = -1

Query: 360 ILIPSALLLCKILKICGTFTSMDPRMMPIPRPLLSVDLKHGTSRKLYFRKYSL*HF*DNT 181
           IL  +  LLC+ L +    +  +    PIPRP L   LK+       F  +S+  F  + 
Sbjct: 27  ILDLNGTLLCRALAVRSEKSVYEASRNPIPRPGLHNFLKY------IFANFSVMVFSSSK 80

Query: 180 PNNNPFKISAM 148
           P+N    +SA+
Sbjct: 81  PHNVQAMLSAI 91


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/52 (21%), Positives = 27/52 (51%)
 Frame = +1

Query: 181 GVVSKVLQRILSKVQFS*CTMFQIHTQQRSRNRHHSRVHTGKSATNFQNFTK 336
           G+  ++  R++S+++ +     Q H Q+ S ++HH    +  S++  +   K
Sbjct: 524 GMSMEMANRVISEIRTTKIYKAQQHKQKSSHHKHHHHKKSKSSSSKHKENDK 575


>SPAC4H3.05 |srs2||ATP-dependent DNA helicase, UvrD
           subfamily|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 887

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 161 LKGLLLGVLSQKCYNEYFLKYN 226
           L  LLLG+LS+  Y EY ++ N
Sbjct: 506 LSDLLLGILSEIKYYEYLVRKN 527


>SPAC9.10 |||amino acid permease, unknown 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 591

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -1

Query: 360 ILIPSALLLCKILKICGTFTSM 295
           I I SALLLC IL     FTS+
Sbjct: 453 IYIVSALLLCTILPSAVAFTSL 474


>SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 148

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 461 AIQTAMIAALVLHYGGAPMKGGIFLSVY 544
           A+Q+  IAAL+   G   +KG  F+ +Y
Sbjct: 71  AVQSYSIAALLQLTGTVTLKGAFFVGLY 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,415,547
Number of Sequences: 5004
Number of extensions: 51294
Number of successful extensions: 113
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)