Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23d21
         (555 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41996-4|AAA83473.1|  238|Caenorhabditis elegans Hypothetical pr...    68   5e-12
U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical pr...    29   1.7  
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z77654-3|CAB01129.1|  340|Caenorhabditis elegans Hypothetical pr...    28   5.2  
Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical pr...    27   6.9  
Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical p...    27   9.1  

>U41996-4|AAA83473.1|  238|Caenorhabditis elegans Hypothetical
           protein F38E1.9 protein.
          Length = 238

 Score = 67.7 bits (158), Expect = 5e-12
 Identities = 39/135 (28%), Positives = 59/135 (43%)
 Frame = +2

Query: 149 MAEILKGLLLGVLSQKCYNEYFLKYNFLDVPCFKSTXXXXXXXXXXXXXXXXXXPQIFKI 328
           M +I++ L  G     C+ E  + +NF    C K+                   PQI KI
Sbjct: 1   MNDIIQSLFPG----NCFEELLINFNFFHPTCPKAVLSRGLGFAITLGSILLFVPQILKI 56

Query: 329 LQSKSAEGINIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHYGG 508
             ++SA+GI+     L L       +YSY  GF FS WG+  F+A+Q  +I   +  + G
Sbjct: 57  QAARSAQGISAASQLLALVGAIGTASYSYRSGFVFSGWGDSFFVAVQLVIIILQIFLFSG 116

Query: 509 APMKGGIFLSVYCAI 553
             M    FL +  A+
Sbjct: 117 QTMLSVGFLGIVSAV 131


>U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical
           protein F20D12.1b protein.
          Length = 867

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 448 RNIFSHPNGNDSSFSTPLWWRSNEGRNISVCL 543
           +N+ +HPN  DSSF+  + + S++  NI  CL
Sbjct: 496 KNLVTHPNYRDSSFTPFVLFISDDVPNIHECL 527


>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
           protein F20D12.1a protein.
          Length = 1030

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 448 RNIFSHPNGNDSSFSTPLWWRSNEGRNISVCL 543
           +N+ +HPN  DSSF+  + + S++  NI  CL
Sbjct: 659 KNLVTHPNYRDSSFTPFVLFISDDVPNIHECL 690


>Z77654-3|CAB01129.1|  340|Caenorhabditis elegans Hypothetical
           protein C50B8.3 protein.
          Length = 340

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -2

Query: 482 LSLPFGWLKMFLHPMH*MGNPLHSYK 405
           LS+ F W   F HP+H  G P   Y+
Sbjct: 239 LSMDFTWGDSFSHPLHTHGGPYWQYE 264


>Z78018-5|CAB01446.1|  398|Caenorhabditis elegans Hypothetical
           protein W07G4.5a protein.
          Length = 398

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -1

Query: 357 LIPSALLLCKILKI-CGTFTSMDPRMMPIPRPLLSVDLKHGTSRKL 223
           LI S L+LC +LKI  G+ T +    MP+P+    V L    S KL
Sbjct: 27  LILSPLILCALLKIDFGSPTGVSHLTMPVPQSEQLVKLLEVQSVKL 72


>Z70753-11|CAA94766.1|  244|Caenorhabditis elegans Hypothetical
           protein F40F9.2 protein.
          Length = 244

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 380 LFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVL 496
           +FAITA F    ++  PF  W +  F     A+I  LV+
Sbjct: 42  MFAITAAFCVIPMVSEPFQDWVKNNFWVYFIAIIVFLVV 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,251,862
Number of Sequences: 27780
Number of extensions: 287423
Number of successful extensions: 581
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)