Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23d21
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.1  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 12/46 (26%), Positives = 20/46 (43%)
 Frame = +3

Query: 174 Y*GCCLKSVTTNTF*STIFLMYHVSNPHSAKVSESASF*GPYW*KC 311
           Y  C +  V ++   + + L YH  N  + ++SE       YW  C
Sbjct: 297 YFNCIMFMVASSVVSTILILNYHHRNADTHEMSEWVKVVFLYWLPC 342


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 247 QIHTQQRSRNRHHSRVHTGK 306
           Q H +++S+N HH    T K
Sbjct: 55  QDHNKEKSKNNHHCNQDTEK 74


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 454 IFSHPNGNDSSFSTPLWWRSN 516
           +F H    D  F T LW ++N
Sbjct: 114 LFYHAKDFDIFFKTALWAKNN 134


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +1

Query: 454 IFSHPNGNDSSFSTPLWWRSN 516
           +F H    D  F T LW ++N
Sbjct: 114 LFYHAKDFDIFFKTALWAKNN 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,655
Number of Sequences: 438
Number of extensions: 3717
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)