Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23d20
(474 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr... 55 2e-08
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p... 43 1e-04
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt... 43 1e-04
U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical pr... 37 0.006
Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr... 27 5.2
U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical pr... 27 5.2
AL031630-21|CAA20997.2| 736|Caenorhabditis elegans Hypothetical... 27 6.9
U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical pr... 27 9.1
>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical
protein F29G6.1 protein.
Length = 1170
Score = 55.2 bits (127), Expect = 2e-08
Identities = 27/59 (45%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +2
Query: 131 PPSCACYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSE----GNVGFPAC 295
PP C C RPVCGTD TYNN C L C R + L Y G C + VG P C
Sbjct: 16 PPDCDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDKKECEKVGTPIC 74
Score = 40.3 bits (90), Expect = 7e-04
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +2
Query: 287 PACHCDYDLNQVCGSDNHTYDXXXXXXXXXXTNPGLXILYSGLCADE 427
P C C + VCG+DN TY+ TN L Y+G C D+
Sbjct: 17 PDCDCPSVIRPVCGTDNVTYNNLCFLRCVQRTNEDLLFFYNGTCCDK 63
Score = 39.1 bits (87), Expect = 0.002
Identities = 32/115 (27%), Positives = 43/115 (37%), Gaps = 7/115 (6%)
Frame = +2
Query: 146 CYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSE---GNVGFPACHCDYDLN 316
C ++ P+C +D TY N C D L V ++G CSE PA + D +
Sbjct: 590 CTDDKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSECLDSPCALPAENSP-DES 648
Query: 317 QVCGSDNHTYDXXXXXXXXXXTNPG----LXILYSGLCADEVKIVDGPSKYPSCT 469
VC D T G L + Y G+C V+ D P CT
Sbjct: 649 FVCLEDQSTKSLCEYQMLSCIFERGYGVNLTVQYIGVCCPPVESCDTEKPDPVCT 703
Score = 37.9 bits (84), Expect = 0.004
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +2
Query: 137 SCACYRNQRPVCGTDGKTYNNECLL--DCATRDDPGLRVRYQGPCSEGNVGFPACHCDYD 310
S C + P+CGT+G T+ N C L + + + V Y G C + N C D
Sbjct: 769 SMECDNSYDPLCGTNGVTFTNACSLQKEICESANSTIEVAYTGMCCDTN-------CPSD 821
Query: 311 LNQVCGSDNHTY 346
+ VC S T+
Sbjct: 822 FSPVCDSKGSTH 833
Score = 35.1 bits (77), Expect = 0.026
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 2/112 (1%)
Frame = +2
Query: 134 PSCACYRNQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEGNVGFPACH--CDY 307
P C + +PVC + G + N C + + E + AC C
Sbjct: 533 PKPNCPTDGQPVCDSAGNLHGNLCEFTYSRCIAASKGHQIHIATEENCISKEACQMPCTD 592
Query: 308 DLNQVCGSDNHTYDXXXXXXXXXXTNPGLXILYSGLCADEVKIVDGPSKYPS 463
D + +C SD TY+ + L +L+ G C++ +D P P+
Sbjct: 593 DKHPICASDFSTYENLCQFRKQKCLDSELEVLFKGKCSE---CLDSPCALPA 641
Score = 34.7 bits (76), Expect = 0.034
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Frame = +2
Query: 164 PVCGTDGKTYNNECLLD---C--ATRDDPGLRVRYQGPCSEGNVGFPACHCDYDLNQVC- 325
PVC T+G T+ N CL+D C ++ ++V YQG C CD D VC
Sbjct: 931 PVCDTEGVTHANMCLMDQNACIQMKKNKKTIQVSYQGQCCNQ-------PCDEDKTPVCD 983
Query: 326 GSDNH--TYDXXXXXXXXXXTNPGLXILYSGLC 418
G+ H N L I YSG C
Sbjct: 984 GTITHPNICRFRIAQCEAERVNKTLSIAYSGEC 1016
Score = 30.3 bits (65), Expect = 0.74
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Frame = +2
Query: 143 ACYRNQRPVCGTDGKT-------YNNECLLDCATRDDPGLRVRYQGPCSEGNVGFPACHC 301
+C + +PVC + G+T +N++C+ D + L + YQG C PA C
Sbjct: 1072 SCPKTGQPVCDSRGRTHDSLCHFHNSKCIFDKIHTQNTTLTLDYQGKCC------PA-GC 1124
Query: 302 DYDLNQVCGSDNHTY 346
+L+ +C + Y
Sbjct: 1125 TDELSVICDQHENIY 1139
Score = 29.1 bits (62), Expect = 1.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +2
Query: 143 ACYRNQRPVCGTDGKTYNNECLLD 214
AC + PVC ++G+ NEC LD
Sbjct: 871 ACPKEYSPVCASNGQNIVNECELD 894
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Frame = +2
Query: 146 CYRNQRPVCGTDGKTYNNEC---LLDCATRDDPGLRVR--YQGPCSEGNVGFPACHCDYD 310
C + P+C G+T+ N+C C + GL + + G CS + + ++D
Sbjct: 66 CEKVGTPICDNFGETHINDCHFAQFQCIMKKSMGLSLTKLHMGRCSSKDCNHNCTNTEFD 125
Query: 311 LNQVCGSDNHTY 346
VC ++ Y
Sbjct: 126 --PVCDTNGSVY 135
>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
protein F41G3.12 protein.
Length = 1483
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 146 CYRNQRPVCGTDGKTYNNECLLD-CATRDDPGLRVRYQGPCSEGNVGFPACHCDY 307
C N VCGTDGKTY NEC L A ++ + V +G C E C +
Sbjct: 323 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEKMECGF 377
Score = 41.1 bits (92), Expect = 4e-04
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Frame = +2
Query: 146 CYRNQRPVCGTDGKTYNNECLL---DCATRDDPGLRVRYQGPCSEGNV------------ 280
C RPVC T+G+T++NEC + C T+ ++V++QG C G
Sbjct: 397 CEDVMRPVCATNGETFDNECEMKKKSCETKS--MIKVKHQGTCGIGVCATFDSCKKPQVC 454
Query: 281 ----GFPAC---HCDYDLNQVCGSDNHTY 346
G P C C + +VCGSD TY
Sbjct: 455 VVVDGKPKCVCPSCTDEFKEVCGSDGKTY 483
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 107 QVIATLAYPPSC---ACYRNQRPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPC 265
QV + P C +C + VCG+DGKTY+NEC L + A + V+Y C
Sbjct: 452 QVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 508
Score = 35.9 bits (79), Expect = 0.015
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 131 PPSCACYRNQ--RPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPCSE 271
P C Y + + VCGTDG TY++EC + A + ++G C E
Sbjct: 537 PDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCDE 586
Score = 33.5 bits (73), Expect = 0.079
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +2
Query: 134 PSCACYRNQRPVCGTDGKTYNNECLLD-CATRDDPGLRV 247
P+C N P+CG+DG YNN+C L+ + RD + V
Sbjct: 684 PTCNLSSNY-PICGSDGIVYNNQCHLNTISCRDQREIHV 721
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 167 VCGTDGKTYNNECLL 211
VCG+DG TY+N C L
Sbjct: 880 VCGSDGTTYSNLCEL 894
>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
protein) homologfamily member protein.
Length = 1473
Score = 42.7 bits (96), Expect = 1e-04
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 146 CYRNQRPVCGTDGKTYNNECLLD-CATRDDPGLRVRYQGPCSEGNVGFPACHCDY 307
C N VCGTDGKTY NEC L A ++ + V +G C E C +
Sbjct: 331 CTMNSAHVCGTDGKTYLNECFLKLAACKEQKDILVWKRGNCDEAGSPCEKMECGF 385
Score = 41.1 bits (92), Expect = 4e-04
Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 22/89 (24%)
Frame = +2
Query: 146 CYRNQRPVCGTDGKTYNNECLL---DCATRDDPGLRVRYQGPCSEGNV------------ 280
C RPVC T+G+T++NEC + C T+ ++V++QG C G
Sbjct: 405 CEDVMRPVCATNGETFDNECEMKKKSCETKS--MIKVKHQGTCGIGVCATFDSCKKPQVC 462
Query: 281 ----GFPAC---HCDYDLNQVCGSDNHTY 346
G P C C + +VCGSD TY
Sbjct: 463 VVVDGKPKCVCPSCTDEFKEVCGSDGKTY 491
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 107 QVIATLAYPPSC---ACYRNQRPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPC 265
QV + P C +C + VCG+DGKTY+NEC L + A + V+Y C
Sbjct: 460 QVCVVVDGKPKCVCPSCTDEFKEVCGSDGKTYSNECRLQNAACMAQKNIFVKYNSAC 516
Score = 35.9 bits (79), Expect = 0.015
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +2
Query: 131 PPSCACYRNQ--RPVCGTDGKTYNNEC-LLDCATRDDPGLRVRYQGPCSE 271
P C Y + + VCGTDG TY++EC + A + ++G C E
Sbjct: 545 PDDCPSYEMEEGKEVCGTDGVTYSSECHMKKSACHQSKFVMTAFEGKCDE 594
Score = 27.1 bits (57), Expect = 6.9
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +2
Query: 167 VCGTDGKTYNNECLL 211
VCG+DG TY+N C L
Sbjct: 819 VCGSDGTTYSNLCEL 833
>U40954-1|ABA00179.1| 251|Caenorhabditis elegans Hypothetical
protein ZK813.6 protein.
Length = 251
Score = 37.1 bits (82), Expect = 0.006
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 137 SCACYRNQRPVCGTDGK---TYNNECLLDCATRDDPGLRVRYQGPC 265
+C+C PVC +G TY+N+C+ CA + L + Y+G C
Sbjct: 24 TCSCKPEIDPVCVREGPYQYTYSNKCVFQCAQENKKDLVLLYEGSC 69
Score = 26.6 bits (56), Expect = 9.1
Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Frame = +2
Query: 146 CYRNQRPVCGTDGKTYNNECLL---DCATRD--DPGLRVRYQGPCSEGNVGFPACHCDYD 310
C PVC G+T+ N C C ++ + L V Y G C E C
Sbjct: 125 CPTEWNPVCDKKGQTHANFCTFLNSKCYHKNQLNESLEVDYSGVCCE-----DMCSAGQT 179
Query: 311 LNQVCGSDNHTY 346
VC S+ +T+
Sbjct: 180 SLTVCDSEGNTH 191
>Z81547-3|CAB04461.1| 253|Caenorhabditis elegans Hypothetical
protein F53F8.4 protein.
Length = 253
Score = 28.3 bits (60), Expect = 3.0
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 128 YPPSCACYRNQRPVCG 175
Y PSCA Y RP CG
Sbjct: 32 YQPSCAAYSQPRPSCG 47
>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
protein C05C9.3 protein.
Length = 1225
Score = 27.5 bits (58), Expect = 5.2
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Frame = -1
Query: 198 LLYVFPSV-------PHTGRWFL*HAQLGGYASVAITCVAASNIPILKYIVN*YIFLSPS 40
LLY FP + H +W + ++ ++ ++C+ +N+ I +I +I+ SPS
Sbjct: 188 LLYHFPQIILPCIGKKHFKKWDQYYWEVESMSTNTLSCICKNNMGIFMHIQEHFIYKSPS 247
Query: 39 LF 34
F
Sbjct: 248 GF 249
>U88173-9|AAK21384.3| 320|Caenorhabditis elegans Hypothetical
protein F46F11.7 protein.
Length = 320
Score = 27.5 bits (58), Expect = 5.2
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = +2
Query: 170 CGTDGKTYNNECLLD-C-ATRDDPGLRVRYQGPCSEGNVGFPACHCDYDLNQVC 325
CG GK N +C+L+ C D G R G C + F H D N +C
Sbjct: 96 CGKHGKCVNGQCILNRCQGVSCDEGSMCR-DGKCEKVLETFCIGHADCGPNMLC 148
>AL031630-21|CAA20997.2| 736|Caenorhabditis elegans Hypothetical
protein Y38H6C.20 protein.
Length = 736
Score = 27.1 bits (57), Expect = 6.9
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +2
Query: 170 CGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEGNVGFPACHCDYDLN-----QVCGSD 334
C + KT EC+LD + V + C++ N F +YD + Q+CG
Sbjct: 237 CEENSKTDQGECVLDMEKAEISRFCVPNRANCTKYNRKFSLTIENYDASVRYGVQICGIL 296
Query: 335 NHTYD 349
+H ++
Sbjct: 297 DHRFE 301
>U39993-3|AAK72060.1| 728|Caenorhabditis elegans Hypothetical
protein F47E1.4 protein.
Length = 728
Score = 26.6 bits (56), Expect = 9.1
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Frame = +2
Query: 140 CACYR-NQRPVCGTDGKTYNNECLLDCATRDDPGLRVRYQGPCSEGNVGFPACHC 301
C+C + PVC DG Y + C C G S+ +GF +C C
Sbjct: 528 CSCENAHLYPVCSADGTAYFSPCHAGCREATQFG---------SDPVIGFASCEC 573
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,538,361
Number of Sequences: 27780
Number of extensions: 216187
Number of successful extensions: 494
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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