Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23d18
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   3.4  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   5.9  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   7.8  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    25   7.8  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   7.8  

>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 55  YSAKESSVVDFCESKTESLSNWVRQVKNKSLTAKTKRKRDLRVIAILSH 201
           ++A   S VDF    T+SLS       N S+T  + +   + +    SH
Sbjct: 524 FAASRPSSVDFMSQSTDSLSKNDTTASNGSMTPSSSQNNSVIIDIPRSH 572


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 39 LSNNGLQCQRIFSC 80
          L++NGL  QR+FSC
Sbjct: 14 LNHNGLSYQRVFSC 27


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 178 RVIAILSHSLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREKIDYLWK-ND 354
           R+ ++    +  A  + V    ERA    Q++    L  K E+   +  EK+DYL K ND
Sbjct: 178 RLESMAPEQIKEAVKDNVELHAERANLQLQLKRTESLLQKSEDKNFKLEEKVDYLSKVND 237

Query: 355 L 357
           +
Sbjct: 238 V 238


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 64  KESSVVDFCESKTESLSNWVR 126
           K ++ V  C SKTES+++ VR
Sbjct: 183 KANATVTLCHSKTESIADIVR 203


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = +1

Query: 184 IAILSHSLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREKIDYLWKNDLSG 363
           +A +  + +RA+ E   K+RE   +  Q   D      E   A    E +    K+DLS 
Sbjct: 394 VAAVEAAKIRADEEKKKKEREEQVRLLQESADKDAEMNEASTATSENEDL----KDDLSL 449

Query: 364 LDSFFKELXN 393
            D   K+  N
Sbjct: 450 ADLSSKKTAN 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,894,639
Number of Sequences: 5004
Number of extensions: 36552
Number of successful extensions: 99
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)