Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23d18
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110...    31   0.37 
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    29   1.5  
06_03_0068 - 16177937-16178746                                         29   2.6  
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305...    27   7.9  
01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912           27   7.9  

>09_01_0076 +
           1105331-1105453,1106559-1106705,1107046-1107195,
           1107272-1107531,1107897-1108084,1108187-1108311,
           1108485-1108521,1108802-1108893,1109023-1109133,
           1109242-1109352,1109576-1109669,1109833-1109945,
           1110316-1110411,1110510-1110617,1110665-1110814,
           1110910-1110990,1111205-1111276,1111553-1111646,
           1111759-1111787,1111870-1111967,1112065-1112160,
           1112399-1112620,1113002-1113158,1113472-1113627,
           1113703-1113930
          Length = 1045

 Score = 31.5 bits (68), Expect = 0.37
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
 Frame = +1

Query: 127 QVKNKSLTAKTKRKRDLRVIAILSHSLVRA-ETELVMKQRERA 252
           QV+ K +  K  +++   ++ IL HS  R  ETE  +KQRE+A
Sbjct: 868 QVREKEMEIKEMKEQMTELVTILRHSESRRRETEKQLKQREQA 910


>08_02_1091 + 24256025-24256190,24256806-24257978,24258066-24258733,
            24258994-24260065,24260241-24260563,24260647-24260835,
            24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 16/75 (21%), Positives = 38/75 (50%)
 Frame = +1

Query: 106  SLSNWVRQVKNKSLTAKTKRKRDLRVIAILSHSLVRAETELVMKQRERARKWAQMQVDLG 285
            S+++++  VK K        KRD+RV A+     V+   +    +RE  +  A+++ +  
Sbjct: 1008 SMTSFIPLVKQKQRPTTVCVKRDVRVKALEVAEAVKRREQKKQNEREMRKAAAELERERV 1067

Query: 286  LSNKEEEIARRHREK 330
               +E+++ +  ++K
Sbjct: 1068 KQEREQKLKQMEQKK 1082


>06_03_0068 - 16177937-16178746
          Length = 269

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 146 RDLFLTCRTQFDRDSVLLSQKSTTE 72
           +D F+TC +Q DRD++L   +  T+
Sbjct: 73  KDFFITCASQSDRDAILRQPRLATK 97


>08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,
            3057104-3057232,3057313-3057572,3057688-3058001,
            3058268-3058491,3058862-3059214,3059489-3059916,
            3060031-3061514
          Length = 1242

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 19/64 (29%), Positives = 31/64 (48%)
 Frame = +1

Query: 133  KNKSLTAKTKRKRDLRVIAILSHSLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIA 312
            K +   A+T  KR + ++   + S +  ETE V+     A++W   + +  LSNK   I 
Sbjct: 1133 KQRIAIARTILKRPVILLLDEATSALDGETEKVVMSSLAAKEWKSKEGE--LSNKITSIT 1190

Query: 313  RRHR 324
              HR
Sbjct: 1191 IAHR 1194


>01_01_0537 + 3931429-3932316,3937245-3937553,3937646-3937912
          Length = 487

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = +1

Query: 34  EPFLIMGYSAKESSVVDFCESKTESLSNWVRQVKNKSLTAKTKRKRDLRVIAILSH 201
           EP+L+   +A  S+  D C +  E+ +  V   K++ L   +   R   + ++LSH
Sbjct: 32  EPWLVA--AAVASTCDDSCVNDVENFARTVAAAKSRQLVGSSAASRPDMLASVLSH 85


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,562,095
Number of Sequences: 37544
Number of extensions: 216722
Number of successful extensions: 591
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)