Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23d18
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr...    28   4.0  
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    28   4.0  
AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical ...    28   4.0  
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     28   4.0  
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     28   4.0  
Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z72513-1|CAA96669.1|  260|Caenorhabditis elegans Hypothetical pr...    27   7.0  
AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective spe...    27   7.0  
Z81122-4|CAB03355.1|  233|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U41553-2|AAA83292.1|  476|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical protein
            C56E6.6 protein.
          Length = 1102

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 141  VSHSQDKEKARFESNRHLESLSSASRD*ARYETKRTCQEVGSD 269
            +SH  DK +     + +LES +SA+ +   Y+TK T      D
Sbjct: 1032 ISHDFDKVECADAQSSNLESFASAANELFSYKTKMTLLSKSED 1074


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 472 KKHRTYITDSNTCSKLPNKFTLVL 401
           KK + +  DS+TCS+ P+K+ ++L
Sbjct: 74  KKKKKFDDDSDTCSRWPSKWNILL 97


>AL117193-1|CAB54981.1|  767|Caenorhabditis elegans Hypothetical
           protein Y105C5A.1 protein.
          Length = 767

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 244 ERARKWAQMQVDLGLSNKEEEIARRHREKIDYLWK-NDLS 360
           E+   W+Q + DL  +   EE     RE+ +  WK NDLS
Sbjct: 555 EKIYHWSQKEEDLNRTLSREEFEELVREEKNKKWKNNDLS 594


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 472 KKHRTYITDSNTCSKLPNKFTLVL 401
           KK + +  DS+TCS+ P+K+ ++L
Sbjct: 16  KKKKKFDDDSDTCSRWPSKWNILL 39


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -1

Query: 472 KKHRTYITDSNTCSKLPNKFTLVL 401
           KK + +  DS+TCS+ P+K+ ++L
Sbjct: 198 KKKKKFDDDSDTCSRWPSKWNILL 221


>Z73427-4|CAA97802.3|  601|Caenorhabditis elegans Hypothetical
           protein F58B3.4 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 19/72 (26%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 172 DLRVIAILSHSLVRAETELVMKQRERARKWAQMQVDLGLSNKEEEIARRHREKID-YLWK 348
           D R  A L+        ++ M+ R++ +      +DL    ++EE+    +EKI     K
Sbjct: 40  DKRFAAALTDERFSTRAKVDMRGRKQKKTVGNSMLDLYELEEDEEVQPLKKEKISKKTTK 99

Query: 349 NDLSGLDSFFKE 384
           ++   LD FF E
Sbjct: 100 DEDDELDDFFDE 111


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical protein
            T06E4.1 protein.
          Length = 1295

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = +1

Query: 127  QVKNKSLTAKTKRKRD--LRVIAILSHSLVRAETELVMKQRERARKWAQMQVDLGLSNKE 300
            Q  ++S+     +++D  LR++  L   +   E      Q+    +  Q+Q+DL    + 
Sbjct: 795  QEVSRSVVDAAVQEKDGLLRLVDTLKLKIEDTEKSAQDLQQSSVEEIKQLQLDLQNFKQN 854

Query: 301  EEIARRHREKIDYLWKNDLSGLDSFFKEL 387
             E+     EK++   K D+  L S  +EL
Sbjct: 855  AEVLESLNEKLNSSHKRDMVALASQLEEL 883


>Z72513-1|CAA96669.1|  260|Caenorhabditis elegans Hypothetical
           protein T04F3.2 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
 Frame = +1

Query: 88  CESKTESLSNWVRQVKNKSLTAKTKRKRDLR-VIAILSHSLVRAETELVMKQRERARKWA 264
           CE +T + +   ++V+  +   + KR R LR +++ L   ++ +        R+ A +W 
Sbjct: 119 CE-ETPTTTVAPKRVRRNNRCKEKKRTRFLRRLVSTLKSEMIMSGINATKVSRDSAIRWK 177

Query: 265 QMQVDLGLSNKEEEIARRHREKIDYLWKN 351
             Q+++  +N  E    +  + +   WKN
Sbjct: 178 FNQLNINHNNVLERSEWKPFKSVLLEWKN 206


>AF098989-1|AAK18955.1| 1219|Caenorhabditis elegans Defective
            spermatogenesis protein15 protein.
          Length = 1219

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 5/77 (6%)
 Frame = +1

Query: 127  QVKNKSLTAKTKRKRDLRVIAILSHS-LVRAETELVMKQRERARKWAQMQVDLG----LS 291
            +V+     A+ K +R+    A      ++R + E   ++RE+A+K  ++Q+++      +
Sbjct: 930  EVERARKEAEDKERREAEEKAAAEQEKILRRKME---EEREKAQKEYELQLEMQKQKLAA 986

Query: 292  NKEEEIARRHREKIDYL 342
              EEE+ RR++E+ D L
Sbjct: 987  EAEEEVKRRNKEERDRL 1003


>Z81122-4|CAB03355.1|  233|Caenorhabditis elegans Hypothetical
           protein T13F2.4 protein.
          Length = 233

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 17/54 (31%), Positives = 25/54 (46%)
 Frame = +1

Query: 28  FIEPFLIMGYSAKESSVVDFCESKTESLSNWVRQVKNKSLTAKTKRKRDLRVIA 189
           FI  ++I    +K   +   C  K E +SN  +  K     AK K+ +  RVIA
Sbjct: 7   FIRFYVISPSWSKIQKISMMCVQKVEKISNNSKIKKTTKRDAKPKKPKMWRVIA 60


>U41553-2|AAA83292.1|  476|Caenorhabditis elegans Hypothetical
           protein ZK1193.3 protein.
          Length = 476

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 378 KKAV*STEIILPQIIDFFPVTPGDFLLFVGQSEVNLHLSPL 256
           +KA       + Q IDF  +    F++F+ Q  ++ +LSP+
Sbjct: 284 RKAPMFQPFFVDQSIDFLTLRASGFIIFIKQWTISANLSPI 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,376,323
Number of Sequences: 27780
Number of extensions: 199823
Number of successful extensions: 625
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)