Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23d15
(542 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0341 - 29398221-29398345,29398757-29398811,29398904-293989... 65 3e-11
09_02_0076 - 3959572-3960279 30 1.4
04_04_0090 - 22747049-22747282,22747438-22747847,22748562-227487... 29 2.4
08_02_0073 + 11919938-11920060,11922325-11922939 29 3.2
04_03_0052 + 10257109-10257337,10257580-10257668,10257708-102582... 29 3.2
01_01_0996 - 7879154-7880117,7881280-7881395 29 3.2
06_03_0319 + 19537529-19538056 28 5.5
08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579 27 7.3
10_05_0048 + 8529413-8530168,8546996-8547220 27 9.7
07_03_0166 + 14637891-14638469 27 9.7
05_03_0045 + 7752571-7752599,7754013-7754078,7754228-7754228,775... 27 9.7
04_03_0258 - 13573730-13573816,13573881-13574666,13575043-135751... 27 9.7
04_03_0068 - 10631827-10631947,10632037-10632112,10632152-106330... 27 9.7
>05_07_0341 -
29398221-29398345,29398757-29398811,29398904-29398981,
29399063-29399154,29399237-29399260,29399353-29399471,
29399839-29399908,29399985-29400051,29400145-29400219,
29400313-29400351,29400735-29400827,29401611-29401634
Length = 286
Score = 65.3 bits (152), Expect = 3e-11
Identities = 38/107 (35%), Positives = 55/107 (51%)
Frame = +3
Query: 201 EFRAGRMTLKGRMVHPDKRKGLLYVYQGEDSLMHFCWKDRTTGEVEDDLLIFPDDCEFTR 380
EFRAG+M+L G V PD RKGL+ + G D + +FP++ F +
Sbjct: 13 EFRAGKMSLDGTRVIPDTRKGLVRI--GRDQI------------------VFPEEAVFEK 52
Query: 381 VNECTTGRVYVXXXXXXXXXXXXWMQEPKADKDEEYCRRINEALNNP 521
V + ++GRVY+ WMQEP AD D + CR++N +N P
Sbjct: 53 VTQ-SSGRVYILKFRHDSRKFFFWMQEPSADDDSQICRQVNAYINRP 98
>09_02_0076 - 3959572-3960279
Length = 235
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/44 (38%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Frame = -1
Query: 446 EALLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVILNLPRSS 318
EA+L++ + +++NS F+ TRK T+++KYK +V+++ PR+S
Sbjct: 49 EAMLQQARD-QFLNS----FMQTRKGTLVQKYKIKVVVDDPRTS 87
>04_04_0090 -
22747049-22747282,22747438-22747847,22748562-22748757,
22749511-22749583,22749673-22749753,22749855-22749940,
22750050-22750126,22750313-22750409,22751025-22752020,
22752882-22752926
Length = 764
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 143 TVWQYVWSWGKFRRKQTHSRISCWSYDVERSYGTSRQK 256
TVW W W +F ++ R W ++ SY +R++
Sbjct: 666 TVWARHWYWKRFAPQEQLKRSERWKDSIDFSYVRARRR 703
>08_02_0073 + 11919938-11920060,11922325-11922939
Length = 245
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -1
Query: 479 ILVSLWLLHPEEALLRKQLELEYINSACGAFIHTRKFTIIRKYKQVIL 336
+L++L L PE+ + + + N +F TRK T+++KYK ++
Sbjct: 74 VLITLDKLTPEQQKDLEAMMQQARNQFLSSFTETRKGTLVQKYKVKVI 121
>04_03_0052 +
10257109-10257337,10257580-10257668,10257708-10258289,
10258477-10258668,10259392-10259563,10260190-10260461,
10260682-10260801,10260912-10260968,10261631-10261831,
10262451-10262511,10262712-10263013
Length = 758
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/39 (35%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = -1
Query: 440 LLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVILNLP 327
L+R+Q + + +NS F+ TRK T+++KYK +++ ++P
Sbjct: 671 LMRQQTQHQLLNS----FMETRKGTVVQKYKVKLVADVP 705
>01_01_0996 - 7879154-7880117,7881280-7881395
Length = 359
Score = 28.7 bits (61), Expect = 3.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 251 VWMYHTTFQRHTTSTKFYYVFVSS*TSPKTRRIAKQC 141
+W +H T R+ ++ + + SS T P RRIA C
Sbjct: 15 LWEFHATGPRNISNPSWRDLIRSSWTDPNYRRIAVSC 51
>06_03_0319 + 19537529-19538056
Length = 175
Score = 27.9 bits (59), Expect = 5.5
Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = -1
Query: 437 LRKQLELEYINSACGAFIHTRKFTIIRKYK-QVILNLPRSS 318
+ +Q +++NS F+ TRK T+++KYK +V+ + PR+S
Sbjct: 53 MMQQARDQFLNS----FMQTRKGTLVQKYKVKVVADDPRTS 89
>08_02_0840 + 21715077-21716962,21717541-21717814,21718265-21718579
Length = 824
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Frame = -1
Query: 308 TKVHERIFSLVNIQEPLPFVWMYH----TTFQRH 219
T ER+F L+N E L FV YH TF RH
Sbjct: 154 THFAERVFELLNPDEDLVFVHDYHLWAFPTFLRH 187
>10_05_0048 + 8529413-8530168,8546996-8547220
Length = 326
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -1
Query: 407 NSACGAFIHTRKFTIIRKYK-QVILNLP 327
N +F+ TRK T+++KYK +V+ ++P
Sbjct: 59 NQFLSSFMQTRKGTVVQKYKVKVVADVP 86
>07_03_0166 + 14637891-14638469
Length = 192
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = -1
Query: 446 EALLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVILNLPRSS 318
EA+L+ Q + +++NS F+ TRK T+++KYK +V+ + P +S
Sbjct: 51 EAMLQ-QAQDQFLNS----FMQTRKGTLVQKYKVKVVADDPGTS 89
>05_03_0045 +
7752571-7752599,7754013-7754078,7754228-7754228,
7757535-7758380
Length = 313
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 473 VSLWLLHPEEALLRKQLELEYINSACGAFIHTRKFTIIRKYK 348
V+++ L PE L +Q+ +F TR+ T+I+KYK
Sbjct: 73 VTIYKLSPEHKLELEQIVNSAQEKFMNSFKETRQGTVIQKYK 114
>04_03_0258 -
13573730-13573816,13573881-13574666,13575043-13575126,
13575254-13575322,13575324-13576228,13576517-13576784
Length = 732
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +3
Query: 258 KGLLYVYQGEDS-LMHFCWKDRTTGEVEDDLLIFPDDCEFTRVNECTTGRVYV 413
K + Y+ D L + W D V D + +PDDC F E +TG V V
Sbjct: 350 KSIQYIRLEYDGHLRLYEWSDEKWTMVSDVIKKYPDDCAFPTCAE-STGYVQV 401
>04_03_0068 -
10631827-10631947,10632037-10632112,10632152-10633021,
10650975-10651599
Length = 563
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/44 (38%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = -1
Query: 446 EALLRKQLELEYINSACGAFIHTRKFTIIRKYK-QVILNLPRSS 318
EA+L+ Q + +++NS F+ TRK T+++KYK +V+ + P +S
Sbjct: 49 EAMLQ-QAQDQFLNS----FMQTRKGTLVQKYKIKVVADDPGTS 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,311,771
Number of Sequences: 37544
Number of extensions: 279941
Number of successful extensions: 659
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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