Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23d15
         (542 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical pr...   110   7e-25
U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U23177-4|AAM22055.1|  374|Caenorhabditis elegans Hypothetical
           protein C56G2.7 protein.
          Length = 374

 Score =  110 bits (264), Expect = 7e-25
 Identities = 57/136 (41%), Positives = 78/136 (57%), Gaps = 6/136 (4%)
 Frame = +3

Query: 141 ALFGNTXXXXXXXXXNKHIVEFRAGRMTLKG------RMVHPDKRKGLLYVYQGEDSLMH 302
           A+F NT         + HIVEF+AGR  L+       R V  + +KGL+++ Q  D L+H
Sbjct: 3   AMFSNTRSVASS---SGHIVEFKAGRSRLEAGSGDTMRKVVAEPKKGLVFIKQSNDMLIH 59

Query: 303 FCWKDRTTGEVEDDLLIFPDDCEFTRVNECTTGRVYVXXXXXXXXXXXXWMQEPKADKDE 482
           FCWKDR TG V DDL+IFPDD EF  V  C  G+VY+            W+Q+   D D+
Sbjct: 60  FCWKDRETGAVVDDLIIFPDDAEFKAVPGCPDGKVYM-LKFKSGDMKLFWIQDSTPDVDK 118

Query: 483 EYCRRINEALNNPPTS 530
           +  +++ +ALN PPTS
Sbjct: 119 DLVKKVTDALNKPPTS 134


>U64845-4|AAC48029.1|  623|Caenorhabditis elegans Hypothetical
           protein F45F2.7 protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
 Frame = -1

Query: 314 FPTKVHERIFSLVNIQEPLPFVWMYHTT-----FQRHTTSTKFYY 195
           FP  +  + F L+NI  PL   + +H++       +H  STK ++
Sbjct: 561 FPALMETKYFELLNISSPLVVFYRFHSSACLAEIWKHAYSTKHHH 605


>Z77652-2|CAB01113.1|  665|Caenorhabditis elegans Hypothetical
          protein C06B3.2 protein.
          Length = 665

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 7  FTFRTCLLQYICRHS 51
          FTF  CLL+++C HS
Sbjct: 5  FTFLFCLLKFVCSHS 19


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,551,485
Number of Sequences: 27780
Number of extensions: 255396
Number of successful extensions: 627
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)