Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23d14
(555 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 27 1.4
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 27 1.9
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 26 4.3
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 26 4.3
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 26 4.3
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 25 5.7
SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49 |... 25 7.5
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 25 9.9
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c... 25 9.9
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 25 9.9
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -3
Query: 529 HRRTV*LLC-RLHHLAPDSGPYSL 461
H + + LC + HLAPDSGPY L
Sbjct: 219 HTKPIMALCWQPLHLAPDSGPYLL 242
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 1.9
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +1
Query: 256 SWLSSAKTKSAEVYTMVKKDLDEIGSAVKCEASHVFSTTSNVIGKTLKLDVPESPANAMK 435
S + S+KTKS +++ KK DE S S+ TS + T K PE+ + +
Sbjct: 421 SLILSSKTKSPQLFNNEKK--DESYSGFSNTNSYAIEETSRALMGTSKTRKPENKSKYLI 478
Query: 436 KS 441
K+
Sbjct: 479 KN 480
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 161 KATWRKNQLIQVRVRQAARKSAMKSSPVTGGTLGCH 268
K T RK+ + +Q A K+A K++P TGG H
Sbjct: 5 KQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPH 40
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 161 KATWRKNQLIQVRVRQAARKSAMKSSPVTGGTLGCH 268
K T RK+ + +Q A K+A K++P TGG H
Sbjct: 5 KQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPH 40
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 161 KATWRKNQLIQVRVRQAARKSAMKSSPVTGGTLGCH 268
K T RK+ + +Q A K+A K++P TGG H
Sbjct: 5 KQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPH 40
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 25.4 bits (53), Expect = 5.7
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Frame = +1
Query: 316 LDEIGSAVKCEASHVFSTTSN--VIGKTLKLDVPESPANAMKKSISTFIGQVSTVLNPEP 489
L+ +G+ V + V ST +N V +TLK + E ++ I+ ++ ++ L E
Sbjct: 322 LERVGNVVDGKIPEV-STAANPEVCLETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380
Query: 490 DDEDDTEVI 516
D+E+++ V+
Sbjct: 381 DNENESWVL 389
>SPBC18H10.17c |||mitochondrial ribosomal protein subunit Mrp49
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.0 bits (52), Expect = 7.5
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +1
Query: 394 LKLDVPESPANAMKKSISTFIGQVSTVLNPEPDDEDDTEVILS 522
LKL +P M++ + I ++ +LN E E+ + LS
Sbjct: 96 LKLPIPVRRRKIMRQEVPNTIADLADILNKEKFPENSVRLQLS 138
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 24.6 bits (51), Expect = 9.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 406 VPESPANAMKKSISTFIGQVSTVLNPEPDDEDDTEVILSSGDTTMLS 546
+P P N ++ I+ I + T+L + DD + LS T +++
Sbjct: 244 IPHLPLNLVQLKITPEISAIRTILINKNTHPDDLQFFLSRIGTMLMN 290
>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 581
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 171 HVAFLVLNTGNFGVHGSL 118
H++F VL+ +FG+ GSL
Sbjct: 115 HISFPVLSRSSFGIWGSL 132
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 24.6 bits (51), Expect = 9.9
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +1
Query: 259 WLSSAKTKSA---EVYTMVKKDLDEIGSAVKCEASHVFSTTSNVIGKTLKLDVPESPANA 429
W+ +K+K A + + DLD+ + V TT + G T + P S N+
Sbjct: 323 WMPGSKSKLATCGDDCVVSLWDLDQPVNPSPAPTLSVSGTTPGMTGSTSEYVTPVSSVNS 382
Query: 430 MKKSIS 447
M+++ S
Sbjct: 383 MRETAS 388
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,695
Number of Sequences: 5004
Number of extensions: 41164
Number of successful extensions: 107
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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