Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23d14
         (555 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0789 - 6150257-6151046,6151167-6151390,6151816-6151991,615...    30   1.4  
11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-29...    28   4.4  
08_02_0490 - 17724878-17725045,17725264-17725342,17725434-177254...    28   5.8  

>07_01_0789 -
           6150257-6151046,6151167-6151390,6151816-6151991,
           6152778-6153801
          Length = 737

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
 Frame = +1

Query: 250 WDSWLSSAKTKSAEVYTMVKKDLDEIGSAVKCEASHVFSTTSNV--IGKTLKLDVPESPA 423
           +D +++  K     +YT +K ++  I + +K  +S    TT  +  +       + + P 
Sbjct: 531 FDKFMTYQKQYVGSLYTWIKLNVIPIDTNLKPNSSQPHETTPPIKRVLHAWHEILGKLPD 590

Query: 424 NAMKKSISTFIGQVSTVLNPEPDD 495
            A KK+I+TF   V T+L  + D+
Sbjct: 591 EAAKKAINTFAEIVKTILVHQEDE 614


>11_01_0039 - 290960-291086,291615-291714,291809-292013,292466-292513,
            295071-295646,295828-296260,296470-297338,297433-298227,
            298709-298753,299135-299352,300055-300364,302715-302984
          Length = 1331

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 1/103 (0%)
 Frame = +1

Query: 250  WDSWLSSAKTKSAEVYTMVK-KDLDEIGSAVKCEASHVFSTTSNVIGKTLKLDVPESPAN 426
            WD W  +      E+   +K K L+    ++ C  S ++++      + L   V +    
Sbjct: 1084 WDRWTITGNITLRELLDWLKEKGLNAY--SISCGTSLLYNSMFPRHKERLDKKVVDVARE 1141

Query: 427  AMKKSISTFIGQVSTVLNPEPDDEDDTEVILSSGDTTMLSTYK 555
              K  +  +   +  V+  E DD++D ++ L+S  +   +TY+
Sbjct: 1142 VAKVEVPPYRRHLDVVVACEDDDDNDVDIPLNSLASLFPTTYQ 1184


>08_02_0490 -
           17724878-17725045,17725264-17725342,17725434-17725498,
           17725569-17725657,17725750-17725858,17725969-17726047,
           17727247-17727512
          Length = 284

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +2

Query: 146 VFNTRKATWRKNQLIQVRVRQAARKSAMKSSPVTGG 253
           ++N  K  W KN   Q R R+  +K   K S    G
Sbjct: 239 IYNKHKKVWEKNMKEQFRFRKKLKKRGKKKSAEGSG 274


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,788,894
Number of Sequences: 37544
Number of extensions: 258001
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1257681096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)