Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23d14
(555 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical ... 39 0.002
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr... 28 3.9
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 28 5.2
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 28 5.2
U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical p... 28 5.2
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 28 5.2
AF067222-3|AAC17019.1| 292|Caenorhabditis elegans Hypothetical ... 28 5.2
Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical pr... 27 9.1
U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with... 27 9.1
U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with... 27 9.1
U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical pr... 27 9.1
U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein... 27 9.1
U00055-3|AAA50723.3| 693|Caenorhabditis elegans Hypothetical pr... 27 9.1
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel... 27 9.1
AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans nonsense-medi... 27 9.1
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell... 27 9.1
AF016438-13|AAK84531.2| 402|Caenorhabditis elegans Nuclear horm... 27 9.1
AF016438-7|AAQ62454.1| 451|Caenorhabditis elegans Nuclear hormo... 27 9.1
>AC024880-9|AAK85515.1| 446|Caenorhabditis elegans Hypothetical
protein Y97E10AR.6 protein.
Length = 446
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +1
Query: 235 QSGNWWDSWLSSAKTKSAEVYTMVKKDLDEIGSAVKCEASHVFSTTSNVIG 387
Q +W S+L+SAK K+ +VKKDL+++ AV E + + S G
Sbjct: 117 QGSSWGASFLNSAKEKTMTTLDLVKKDLNDLSEAVSAEVTDLASAAKEGFG 167
>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
F32H2.5 protein.
Length = 2586
Score = 28.3 bits (60), Expect = 3.9
Identities = 19/46 (41%), Positives = 25/46 (54%)
Frame = +1
Query: 310 KDLDEIGSAVKCEASHVFSTTSNVIGKTLKLDVPESPANAMKKSIS 447
K LD + V E +VFS T ++ K +KLDV SP N + IS
Sbjct: 924 KGLDYTKTPVVFENINVFSAT--ILTKPIKLDVVLSPGNGYFEIIS 967
>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
protein F35D11.11a protein.
Length = 1840
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +1
Query: 304 VKKDLDEIGSAVKCEASHVFSTTSNVIGKTLKLDVPESPANAMKKSIST 450
++++ DE+ + V + +++ KTL+LD+ E+ + +KK + T
Sbjct: 492 IRRESDELRETQRSLKGDVAAMKTDLDDKTLRLDMLETERDELKKKLET 540
>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
protein F35D11.11c protein.
Length = 1898
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +1
Query: 304 VKKDLDEIGSAVKCEASHVFSTTSNVIGKTLKLDVPESPANAMKKSIST 450
++++ DE+ + V + +++ KTL+LD+ E+ + +KK + T
Sbjct: 492 IRRESDELRETQRSLKGDVAAMKTDLDDKTLRLDMLETERDELKKKLET 540
>U29381-12|AAM98022.3| 1671|Caenorhabditis elegans Hypothetical
protein F35D11.11d protein.
Length = 1671
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +1
Query: 304 VKKDLDEIGSAVKCEASHVFSTTSNVIGKTLKLDVPESPANAMKKSIST 450
++++ DE+ + V + +++ KTL+LD+ E+ + +KK + T
Sbjct: 252 IRRESDELRETQRSLKGDVAAMKTDLDDKTLRLDMLETERDELKKKLET 300
>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
protein F35D11.11b protein.
Length = 1911
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/49 (24%), Positives = 28/49 (57%)
Frame = +1
Query: 304 VKKDLDEIGSAVKCEASHVFSTTSNVIGKTLKLDVPESPANAMKKSIST 450
++++ DE+ + V + +++ KTL+LD+ E+ + +KK + T
Sbjct: 492 IRRESDELRETQRSLKGDVAAMKTDLDDKTLRLDMLETERDELKKKLET 540
>AF067222-3|AAC17019.1| 292|Caenorhabditis elegans Hypothetical
protein H11E01.1 protein.
Length = 292
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = +1
Query: 295 YTMVKKDLDEIGSAVKCEASHVFSTTSNVIGKTLKLDVPESPANAMK 435
++++ K A+ AS + + I +KLDV PA+ K
Sbjct: 37 FSIISKSTKRYAEALNISASEILMVINETINLDVKLDVQNDPAHRYK 83
>Z98866-6|CAB11546.1| 136|Caenorhabditis elegans Hypothetical
protein Y49E10.6 protein.
Length = 136
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 161 KATWRKNQLIQVRVRQAARKSAMKSSPVTGGTLGCH 268
K T RK+ + +Q A K+A KS+P TGG H
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPH 40
>U97189-4|AAC48167.3| 2322|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform a
protein.
Length = 2322
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 344 HLTALPISSRSFFTIVYTSADLVL 273
+LT +P+SSR FFT+ S ++ L
Sbjct: 843 NLTEIPVSSRQFFTVNAASCEVWL 866
>U97189-3|AAT68901.1| 2019|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 1, isoform b
protein.
Length = 2019
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 344 HLTALPISSRSFFTIVYTSADLVL 273
+LT +P+SSR FFT+ S ++ L
Sbjct: 843 NLTEIPVSSRQFFTVNAASCEVWL 866
>U39855-1|AAA81080.3| 615|Caenorhabditis elegans Hypothetical
protein F18G5.4 protein.
Length = 615
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -3
Query: 214 SCLPHSHLNQLIFPPCRFSRIKHR 143
SCL S L + F PCRF+ I+H+
Sbjct: 6 SCLTVSILLTIKFVPCRFAGIEHQ 29
>U28732-2|AAB04902.1| 136|Caenorhabditis elegans Histone protein 71
protein.
Length = 136
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +2
Query: 161 KATWRKNQLIQVRVRQAARKSAMKSSPVTGGTLGCH 268
K T RK+ + +Q A K+A KS+P TGG H
Sbjct: 5 KQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPH 40
>U00055-3|AAA50723.3| 693|Caenorhabditis elegans Hypothetical
protein R02F2.7 protein.
Length = 693
Score = 27.1 bits (57), Expect = 9.1
Identities = 16/67 (23%), Positives = 33/67 (49%)
Frame = -2
Query: 323 SSRSFFTIVYTSADLVLADDNQESHQLPDCFSSLICELLASLALESVDFSAMSLFSY*TQ 144
S S+FT++ + DL+ + + F++L C+L + + S F SL + ++
Sbjct: 535 SDESWFTVLVETIDLLDIAMKSAKNSVLKSFTALFCQLFSQVLKNSQKFVRNSLNAVASR 594
Query: 143 EISVFMD 123
+S M+
Sbjct: 595 TLSPEME 601
>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-related
protein LIN-59 protein.
Length = 1312
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Frame = +1
Query: 253 DSWLSSAKTKSAEVYTMVKKDLDEIGSAVKCEASHVF---STTSNVIGKTLKLDVPESPA 423
D+W S + K + LDE G+ V+C+ H + V+ K ++P
Sbjct: 954 DAWESYSTNKKGNAVRCICGALDEEGTMVQCDTCHFWLHVDCCQYVVRSNEKAQKSKNPP 1013
Query: 424 NAMKKSISTFIGQVSTVLNPEPD 492
+ + I F L P D
Sbjct: 1014 SDDGEYICDFCTNKQNGLRPSAD 1036
>AF149821-1|AAD48773.1| 2322|Caenorhabditis elegans
nonsense-mediated mRNA decay proteinSMG-1 protein.
Length = 2322
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = -2
Query: 344 HLTALPISSRSFFTIVYTSADLVL 273
+LT +P+SSR FFT+ S ++ L
Sbjct: 843 NLTEIPVSSRQFFTVNAASCEVWL 866
>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
lineage protein 59 protein.
Length = 1312
Score = 27.1 bits (57), Expect = 9.1
Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 3/83 (3%)
Frame = +1
Query: 253 DSWLSSAKTKSAEVYTMVKKDLDEIGSAVKCEASHVF---STTSNVIGKTLKLDVPESPA 423
D+W S + K + LDE G+ V+C+ H + V+ K ++P
Sbjct: 954 DAWESYSTNKKGNAVRCICGALDEEGTMVQCDTCHFWLHVDCCQYVVRSNEKAQKSKNPP 1013
Query: 424 NAMKKSISTFIGQVSTVLNPEPD 492
+ + I F L P D
Sbjct: 1014 SDDGEYICDFCTNKQNGLRPSAD 1036
>AF016438-13|AAK84531.2| 402|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 96 protein.
Length = 402
Score = 27.1 bits (57), Expect = 9.1
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = +1
Query: 310 KDLDEIGSAVK-CEASHVFSTTSNVIGKTLKLDVPESPANAMKKSISTFIGQVSTVLNPE 486
K E+G VK + + +TSN+ K + L PA++M STF+G+ S +L+ E
Sbjct: 65 KRCQEVGMDVKKIQQNRDLISTSNMFQKRVTLIF--GPAHSM----STFLGRPSFLLHCE 118
Query: 487 PDDEDDTEVIL 519
P+ ++ I+
Sbjct: 119 PELASHSKTII 129
>AF016438-7|AAQ62454.1| 451|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 128, isoform b protein.
Length = 451
Score = 27.1 bits (57), Expect = 9.1
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +1
Query: 322 EIG-SAVKCEASHVFSTTSNVIGKTLKLDVPESPANAMKKSISTFIGQVSTVLNPEPDDE 498
E+G A K +++ ++S+ GK L++P+S +STF+G+ + +L EPD
Sbjct: 117 EVGMDASKFQSNRDLISSSHSFGKPKSLNLPQS--------LSTFLGRPAFILCCEPDKT 168
Query: 499 DDTEVIL 519
+ ++
Sbjct: 169 SGRKTLI 175
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,149,458
Number of Sequences: 27780
Number of extensions: 240840
Number of successful extensions: 740
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1134321766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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