Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23d14
         (555 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   4.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.4  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 376 NVIGKTLKLDVPESPANAMKKSISTFIGQVSTVL 477
           +VIGK +K  +PE   N   +  S  IG  +T++
Sbjct: 47  DVIGKKIKELLPEVLNNHCNRCTSRQIGIANTLI 80


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 441 YQHIHRSSEYGPESGAR**RRHRSYTV 521
           + H H  S+Y P  G+    +H ++T+
Sbjct: 317 HPHQHHPSQYHPHRGSSPHHQHGNHTM 343


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +1

Query: 454 IGQVSTVLNPEPDDEDDTEVILSSG 528
           +G+V    + + DD+DD +V  ++G
Sbjct: 386 VGEVDEDDDDDGDDDDDDDVEAANG 410


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 10/35 (28%), Positives = 17/35 (48%)
 Frame = +2

Query: 146 VFNTRKATWRKNQLIQVRVRQAARKSAMKSSPVTG 250
           V +T  A W +N+L+  R  +   K+      +TG
Sbjct: 320 VGDTSLACWNENRLLDRRNIEVVAKNKETLQAITG 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,608
Number of Sequences: 438
Number of extensions: 2983
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15949830
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)