Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23d12
(608 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.13c |mob1||protein kinase regulator Mob1|Schizosaccharom... 33 0.043
SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 32 0.057
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 28 1.2
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac... 27 2.1
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.8
SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation protein... 26 3.7
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce... 26 5.0
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 26 5.0
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 8.7
SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr 2|||Ma... 25 8.7
>SPBC428.13c |mob1||protein kinase regulator
Mob1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 32.7 bits (71), Expect = 0.043
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +3
Query: 414 FPKIFRKILEMIFRHFIRTVFRRTYCTEY 500
FPK FRK+++ IFR R ++ YC+ +
Sbjct: 138 FPKNFRKVIQQIFRRLFR-IYAHIYCSHF 165
>SPBC947.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 103
Score = 32.3 bits (70), Expect = 0.057
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +1
Query: 115 KKFIKLIAKWPLDVTKGDRDLGKFIRDRVKFVFESPEKHNLDSEYCNRQYQALNRLADNH 294
+K K +A WP D + K + ++ + + + N+Q ALN L DN
Sbjct: 5 QKITKAVALWPKDELRPWLSFPKTLDTSIRARLQK-----MPPQQANKQLNALNNLLDNV 59
Query: 295 YRNKY 309
Y NKY
Sbjct: 60 YWNKY 64
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 151 DVTKGDRDLGKFIRDRVKFVFESPEKHNLDSEYCNRQY 264
++ +G+R + + DR + S +HN DS+ NR Y
Sbjct: 395 EIIQGNRTIQESNNDRDESTVASIHRHNFDSDSINRLY 432
>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 853
Score = 27.1 bits (57), Expect = 2.1
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 283 ADNHYRNKYKRTKSSTATG-LSTEECNLILSNEVLAYLKEQ 402
+++H +N SST+ G + E CN + +NE L KE+
Sbjct: 558 SNDHSKNNLPSDSSSTSLGKVKLELCNSLETNEELIITKEK 598
>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 2.8
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 220 PEKHNLDSEYCNRQYQAL--NRLADNHYRNKYKRTKSSTATGLSTEECNLILSNEV 381
PE NL S YC+ YQ L N AD + ++ T S + NL ++NEV
Sbjct: 262 PEFRNLLSYYCSHNYQHLIENESADINIAHR------PLTTLFSDTDSNLAITNEV 311
>SPAC4F8.03 ||SPAC644.01c|SBDS family ribosome maturation
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 246
Score = 26.2 bits (55), Expect = 3.7
Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = +1
Query: 178 GKFIRDRVKFVFESPEKHNLDSEY-C-----NRQYQALNRLADNHYRNK 306
GK +R+R++ + + E+ N+D EY C Y+ ++ L N +N+
Sbjct: 185 GKALRERLRSLADEIEEENIDDEYECIALVIPGNYKLIDELVRNETKNR 233
>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 5.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -1
Query: 224 SGDSKTNLTLSLMNLPRSLSPLVTSNGHLAMSL 126
S S T L+ + P SLSP++TS+ +A SL
Sbjct: 255 SPQSNTPLSTFRHSSPLSLSPVITSDNDVANSL 287
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 5.0
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 88 KYIAMTTQYKKFIKLIAKWPLDVTKGDRDLGKFIRDRVKFVFESPEKHNLD-SEYCNRQY 264
++ M QY++ AK PL+ +DLG D+ ++ P H D +C + Y
Sbjct: 237 EWFCMKCQYRR-----AKQPLETGMTAQDLGLSESDKKMYLSSLPTPHLADLILFCEKSY 291
Query: 265 QAL 273
+L
Sbjct: 292 PSL 294
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.0 bits (52), Expect = 8.7
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +3
Query: 501 VKYKDHTPVMLNEALKYLKPQD 566
V+Y+++ P++LN+ +KPQ+
Sbjct: 1231 VRYRENLPLVLNDISVNIKPQE 1252
>SPBC1105.08 |||EMP70 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 629
Score = 25.0 bits (52), Expect = 8.7
Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 183 LTKVSVSFSYIQWPFSYEFDKFLILSCHS--YIFLFH 79
+T SVS+ Y P++ +DK++ + +IF+ H
Sbjct: 235 VTSYSVSWKYSDTPWATRWDKYMHIESRQIRWIFIIH 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,071,272
Number of Sequences: 5004
Number of extensions: 39964
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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