Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23d08
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr 2... 102 4e-23
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 28 1.0
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 26 4.1
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 25 7.2
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc... 25 7.2
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 25 7.2
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 25 9.5
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 25 9.5
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.5
SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase Pef1|... 25 9.5
SPCC613.03 |||conserved fungal protein|Schizosaccharomyces pombe... 25 9.5
>SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr
2|||Manual
Length = 85
Score = 102 bits (245), Expect = 4e-23
Identities = 41/80 (51%), Positives = 59/80 (73%)
Frame = +1
Query: 115 MGERYNIHSQLEHLQSKYIGTGHADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENES 294
M +R ++LE LQ++Y+G G+A TTKYEW++NQHRD+ S +GHP LL+Y A E
Sbjct: 1 MADRLRSQAKLEQLQARYVGVGNAFTTKYEWMVNQHRDTLSSVVGHPPLLAYMATALGEP 60
Query: 295 KARVKFNLMERMLQPCGPPP 354
+ +V+ NL+E+M+ PCGPPP
Sbjct: 61 RVQVRKNLLEKMIMPCGPPP 80
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 28.3 bits (60), Expect = 1.0
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 288 IFYDRKVTQQIRMTHVTAARVAMLVHKPFI 199
+F K+T + MTH+ +A+ L +KP I
Sbjct: 364 LFSSFKITTDLEMTHLESAKKKYLAYKPLI 393
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 26.2 bits (55), Expect = 4.1
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 297 FRFIFYDRKVTQQIRMTHVTAARVAMLVHKPFIFCSVG 184
++++ K + +R +A R AML HKP + S G
Sbjct: 155 YKYLECSAKTNEGVREVFESATRAAMLKHKPKVKPSSG 192
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.4 bits (53), Expect = 7.2
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = -1
Query: 444 YVMIRDSKSNNK*ISLILFLKSKRLIFRLFWRWAAWLKHSFHQIE 310
Y I D N +SL K +FR WR A+W K S ++
Sbjct: 985 YAEIDDRNPEN--VSLYHIALHKINVFRDLWRLASWHKESARTVK 1027
>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 618
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 585 SMVKCLTILFLYTNLFHIVLS 647
SM +T LFL+TN F +LS
Sbjct: 507 SMKSIITALFLFTNAFGAILS 527
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 336 LKHSFHQIEFYARFRFIFYDRKVTQQIR 253
LK+ H I+ + + F FY+ QQIR
Sbjct: 397 LKNKVHTIKEFEKIVFYFYEASDLQQIR 424
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -1
Query: 243 VTAARVAMLVHKPFIFCSVGVACAYIFAL*MFKLTVNVVSFTH 115
+T +A ++ P F G CA +FA + + + TH
Sbjct: 199 LTRLYLARFLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITH 241
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = -1
Query: 351 RWAAWLKHSFHQIEFYARFRFIFYD 277
+W W+ H+FH I+ RF+ D
Sbjct: 429 QWKTWISHTFH-IDPMGPSRFVLMD 452
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 25.0 bits (52), Expect = 9.5
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -1
Query: 243 VTAARVAMLVHKPFIFCSVGVACAYIFAL*MFKLTVNVVSFTH 115
+T +A ++ P F G CA +FA + + + TH
Sbjct: 199 LTRLYLARFLNSPQYFIPYGTLCANVFATLLLSIMYMIPQITH 241
>SPCC16C4.11 |pef1||Pho85/PhoA-like cyclin-dependent kinase
Pef1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 288
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +1
Query: 250 HPDLLSYFAIVENESKARVKFNLMERMLQ 336
HP+++S +++ E+K + F ME+ L+
Sbjct: 58 HPNIMSLSDVLQTENKLMLVFEYMEKDLK 86
>SPCC613.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 189
Score = 25.0 bits (52), Expect = 9.5
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +1
Query: 181 HADTTKYEWLMNQHRDSCCSYMGHPDLLSYFAIVENESKARVKFN-LMERMLQPCGP 348
H D E H Y D+LS + + EN+ VK N ++ +L+ C P
Sbjct: 32 HIDKYTDESFFRLHDLGKKGYWSDQDILSLYGLFENDEVPFVKKNEVLVDVLKKCDP 88
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,508
Number of Sequences: 5004
Number of extensions: 45511
Number of successful extensions: 119
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -