Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23d07
         (592 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain (...    28   5.7  
AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain (...    28   5.7  
AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain (...    28   5.7  
AF022982-4|AAB69938.1|  296|Caenorhabditis elegans Dnaj domain (...    27   10.0 

>AF099923-3|AAN63403.1|  784|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform c protein.
          Length = 784

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 399 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 512
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-2|AAM48544.1|  814|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform a protein.
          Length = 814

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 399 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 512
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 90  PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 127


>AF099923-1|AAM48545.1|  853|Caenorhabditis elegans Ferm domain
           (protein4.1-ezrin-radixin-moesin) family protein 8,
           isoform b protein.
          Length = 853

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 399 PDNGKNTNLRLGYLLGFGLTSGMSMGPLLEYVSVVDPS 512
           PD  +  ++R G  +GFG  +   +  ++++VS   PS
Sbjct: 129 PDGKRTVSIRRGKDIGFGFVAAGQLPTIIQFVSPEGPS 166


>AF022982-4|AAB69938.1|  296|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 22 protein.
          Length = 296

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 168 ESKKKNMNTINFQTFVNSFQNRLEPPVRQHLKNVYATLMMT 290
           ++KKK  +  NF+  + + + +LE  V + +K   ATLM T
Sbjct: 128 QAKKKKTDQRNFKEEIEAIRRQLEKEVNEEVKQ-KATLMKT 167


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,188,241
Number of Sequences: 27780
Number of extensions: 279155
Number of successful extensions: 673
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 673
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)