Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23d04
(588 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z66521-18|CAO82066.1| 134|Caenorhabditis elegans Hypothetical p... 101 3e-22
Z66521-17|CAI46628.1| 103|Caenorhabditis elegans Hypothetical p... 101 3e-22
AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like ... 101 3e-22
Z34802-9|CAB54281.3| 160|Caenorhabditis elegans Hypothetical pr... 34 0.065
Z93397-5|CAD89745.1| 375|Caenorhabditis elegans Hypothetical pr... 30 1.1
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass... 30 1.4
AF125442-4|AAD12794.1| 317|Caenorhabditis elegans Serpentine re... 28 5.7
Z82276-6|CAJ15166.1| 305|Caenorhabditis elegans Hypothetical pr... 27 7.5
AF100306-8|ABB88213.1| 860|Caenorhabditis elegans Hypothetical ... 27 7.5
AF100306-7|ABB88214.1| 895|Caenorhabditis elegans Hypothetical ... 27 7.5
>Z66521-18|CAO82066.1| 134|Caenorhabditis elegans Hypothetical
protein W02B12.15b protein.
Length = 134
Score = 101 bits (243), Expect = 3e-22
Identities = 40/63 (63%), Positives = 50/63 (79%)
Frame = +1
Query: 223 SGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPV 402
S + N I+ D NK+VD +DIEDI EK + CRCW+S+ WPYCDGSHG HNKETGDN GP+
Sbjct: 68 SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 127
Query: 403 VVR 411
+V+
Sbjct: 128 IVK 130
>Z66521-17|CAI46628.1| 103|Caenorhabditis elegans Hypothetical
protein W02B12.15a protein.
Length = 103
Score = 101 bits (243), Expect = 3e-22
Identities = 40/63 (63%), Positives = 50/63 (79%)
Frame = +1
Query: 223 SGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPV 402
S + N I+ D NK+VD +DIEDI EK + CRCW+S+ WPYCDGSHG HNKETGDN GP+
Sbjct: 37 SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 96
Query: 403 VVR 411
+V+
Sbjct: 97 IVK 99
>AB031233-1|BAA92262.1| 605|Caenorhabditis elegans kinesin like
protein protein.
Length = 605
Score = 101 bits (243), Expect = 3e-22
Identities = 40/63 (63%), Positives = 50/63 (79%)
Frame = +1
Query: 223 SGQINPCIRKDINKVVDFIDIEDITEKASLCRCWRSKNWPYCDGSHGPHNKETGDNTGPV 402
S + N I+ D NK+VD +DIEDI EK + CRCW+S+ WPYCDGSHG HNKETGDN GP+
Sbjct: 68 SARCNYKIQLDSNKIVDTVDIEDIGEKKAFCRCWKSEKWPYCDGSHGKHNKETGDNVGPL 127
Query: 403 VVR 411
+V+
Sbjct: 128 IVK 130
>Z34802-9|CAB54281.3| 160|Caenorhabditis elegans Hypothetical
protein M88.7 protein.
Length = 160
Score = 34.3 bits (75), Expect = 0.065
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = +1
Query: 262 KVVDFIDIEDITEKASLCRCWRSKNWPYCDGSH 360
K V FI +D+T LC C ++ N P+CDGSH
Sbjct: 116 KPVRFIPDKDMT--VWLCNCKQTNNRPFCDGSH 146
>Z93397-5|CAD89745.1| 375|Caenorhabditis elegans Hypothetical
protein ZC482.8 protein.
Length = 375
Score = 30.3 bits (65), Expect = 1.1
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -1
Query: 285 NVNKVYNFINVLPD-TRVYLTTASFSGFFYCLVRVVRYT 172
N++K + + VL D T+ ASFSGFF LV +V T
Sbjct: 32 NLHKHFELVTVLTDVTKQLYDIASFSGFFLNLVHLVILT 70
>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
assigned gene nameprotein 213 protein.
Length = 1437
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -1
Query: 303 LLSYILNVNKVY-NFINVLPDTRVYLTTASFSGFFYCLV 190
+LSY+L+ + + NFI + D+ YLT+ F YC++
Sbjct: 560 VLSYLLSQVQTFDNFIGPVVDSLRYLTSLEFDVLTYCII 598
>AF125442-4|AAD12794.1| 317|Caenorhabditis elegans Serpentine
receptor, class v protein21 protein.
Length = 317
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 488 NNSFLHNFFQNYTCYIFFCI 429
NNS + F+ NY Y F CI
Sbjct: 12 NNSLIGKFYWNYLIYYFLCI 31
>Z82276-6|CAJ15166.1| 305|Caenorhabditis elegans Hypothetical
protein K03D3.12 protein.
Length = 305
Score = 27.5 bits (58), Expect = 7.5
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = -1
Query: 303 LLSYILNVNKVYNFINVLPDTRVYLTTASFSGFFYCLV 190
++ I + ++Y+++ + VY+T+ S SGFF+ L+
Sbjct: 61 VVKQIFAMVRIYSYLFIPLTASVYMTSVSESGFFFKLL 98
>AF100306-8|ABB88213.1| 860|Caenorhabditis elegans Hypothetical
protein T24C4.6a protein.
Length = 860
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 420 SQLNTKKYIASVVLEKIM*KRIIALFYLRLSISNHG 527
SQ+N +Y+ +V+L + + + A F + +I NHG
Sbjct: 24 SQINNDEYMETVILPVPLSQELFARFRNKWNIHNHG 59
>AF100306-7|ABB88214.1| 895|Caenorhabditis elegans Hypothetical
protein T24C4.6b protein.
Length = 895
Score = 27.5 bits (58), Expect = 7.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 420 SQLNTKKYIASVVLEKIM*KRIIALFYLRLSISNHG 527
SQ+N +Y+ +V+L + + + A F + +I NHG
Sbjct: 24 SQINNDEYMETVILPVPLSQELFARFRNKWNIHNHG 59
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,270,959
Number of Sequences: 27780
Number of extensions: 280908
Number of successful extensions: 749
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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