Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23d03
         (574 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   6.0  
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |...    25   7.9  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   7.9  

>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 129 CIRLNVTQTPGALTDERVR 73
           C+RLN+ +TP    DE+++
Sbjct: 570 CMRLNIIKTPSFTLDEKIQ 588


>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 652

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +1

Query: 187 VPWLVNQAGSLVYLAAVQRAPLSV 258
           +PW++NQ  SLV+   ++   L++
Sbjct: 1   MPWMINQGHSLVFFPRLENKGLTL 24


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -2

Query: 546 LY*FLYFNIDNFLVIRTNIIHLLD*LSMSEQRLTWCDRL*YALNFSRGLIP 394
           L+ FLY     FL+I  N++H  D  + SE  L   D L    +F   + P
Sbjct: 491 LWIFLYCPFTPFLIIFNNLVHETDTETDSETLLNDLDLLHVIYDFFMEMEP 541


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,669,036
Number of Sequences: 5004
Number of extensions: 27352
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)