Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23d03
         (574 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97191-4|AAY55832.1|  127|Caenorhabditis elegans Hypothetical pr...    60   1e-09
AF003390-2|AAP31432.1|  341|Caenorhabditis elegans Hypothetical ...    27   7.2  
AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical ...    27   7.2  

>U97191-4|AAY55832.1|  127|Caenorhabditis elegans Hypothetical
           protein F53F10.8 protein.
          Length = 127

 Score = 59.7 bits (138), Expect = 1e-09
 Identities = 25/80 (31%), Positives = 52/80 (65%)
 Frame = +1

Query: 43  LMITGVLWGCTNPFIRQGTRGLRDIKSDTLVGQVRAEIWFLLSNWKYVVPWLVNQAGSLV 222
           +++ G +WG TNP +R  ++ L + K+  ++G +++   FL  NW++ +P+ +NQ+GS++
Sbjct: 12  IIVVGFVWGATNPLLRAASKDLENKKNGIILGFLKS---FL--NWRFSIPFALNQSGSVM 66

Query: 223 YLAAVQRAPLSVAVPVASGV 282
           + A V   P++V VP  + +
Sbjct: 67  FNALVVNFPVTVVVPCVNAI 86


>AF003390-2|AAP31432.1|  341|Caenorhabditis elegans Hypothetical
           protein R155.1b protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 154 IWFLLSNWKYVVPWLVNQAGSLV 222
           +WF L+ +KY   WL+ +  S++
Sbjct: 120 LWFRLTMYKYCAMWLITEGASIL 142


>AF003390-1|AAB54271.2|  473|Caenorhabditis elegans Hypothetical
           protein R155.1a protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 154 IWFLLSNWKYVVPWLVNQAGSLV 222
           +WF L+ +KY   WL+ +  S++
Sbjct: 252 LWFRLTMYKYCAMWLITEGASIL 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,259,648
Number of Sequences: 27780
Number of extensions: 161109
Number of successful extensions: 454
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)