Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23c24
         (306 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    27   0.62 
SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces p...    24   5.8  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    23   7.7  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    23   7.7  

>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 27.1 bits (57), Expect = 0.62
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = -3

Query: 172 VNAMIFIHNFHWINAGGDFAIGTVPAVFLRVDSYNRKHSDQCKSDRKXHDFYS 14
           V+ ++ I NFHW  +     I  V  +  ++D Y R +  + +S  + H  Y+
Sbjct: 388 VDVLLAIMNFHWDESNELTPIVAVDNMLQKLDKYERLYPSR-RSILQEHSLYA 439


>SPBC19F5.01c |puc1|SPBP8B7.32c|cyclin Puc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 359

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 172 VNAMIFIHNFHWINAGGDFAIGTVPAVFLRVDSYNRKHSDQCK 44
           VN ++ IHN      G D +I T+P     +DSY  +    CK
Sbjct: 133 VNFIVEIHN------GFDLSIDTLPLSISLMDSYVSRRVVYCK 169


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 291 LHDLLFIIELN*HFAHIYKITYLYFSPP 208
           +H L+  + LN  F H + +TY  F+ P
Sbjct: 603 VHYLVQNVHLNKDFRHSFLLTYKTFTTP 630


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 47  ALIAMFAIVAVNSQENGGDSPDGEVAPGV 133
           AL++ F IV  NS  +   SP GE+AP +
Sbjct: 783 ALLSKFPIV--NSTHHLLPSPQGELAPAI 809


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 938,367
Number of Sequences: 5004
Number of extensions: 14349
Number of successful extensions: 40
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)