Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23c24
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0712 + 5329016-5329744,5330477-5330521 32 0.077
06_01_1052 + 8312752-8312862,8312969-8313041,8313285-8313362,831... 30 0.31
02_04_0064 - 19375497-19375580,19375659-19375733,19376359-193765... 28 1.3
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153 28 1.7
06_02_0017 - 10649527-10651183,10651264-10652363 27 2.2
05_04_0333 + 20333243-20333329,20335048-20335110,20335276-203353... 26 5.1
05_03_0407 + 13582595-13582681,13583067-13583129,13583289-135833... 26 5.1
03_06_0121 - 31806498-31807220 26 5.1
06_01_0452 + 3198475-3198962,3199062-3199191,3199332-3199497,319... 26 6.7
04_04_1324 + 32659752-32661972,32662067-32662761 26 6.7
04_03_0432 - 15861997-15862096,15862449-15862519,15862612-158627... 26 6.7
09_02_0355 - 7727082-7727323,7728036-7728126 25 8.9
06_03_0284 - 19155236-19155400,19155831-19156046,19158387-19158596 25 8.9
03_05_1131 - 30606808-30607042,30607141-30607664 25 8.9
02_05_1104 + 34146610-34146614,34147108-34147231,34147480-341475... 25 8.9
02_05_1101 + 34122061-34122065,34122559-34122682,34122931-341229... 25 8.9
01_01_0024 - 185516-185676,186459-186735 25 8.9
>02_01_0712 + 5329016-5329744,5330477-5330521
Length = 257
Score = 32.3 bits (70), Expect = 0.077
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +2
Query: 89 ENGGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPGG 196
E GG+S GE A VDP+ VV E+ G + GEP G
Sbjct: 188 EEGGESDRGEPAGAVDPLPVVVEEGGWS-GRGEPAG 222
>06_01_1052 +
8312752-8312862,8312969-8313041,8313285-8313362,
8313443-8313523,8313706-8313779,8313865-8313919,
8314031-8314079,8314222-8314359,8314455-8314536,
8315131-8315209,8315357-8315400,8315479-8315673,
8316110-8316185,8317427-8317507,8317623-8317703,
8318128-8318204,8318402-8318499,8318672-8318809,
8319397-8319478,8319564-8319642,8319885-8319931,
8320014-8320228,8320330-8320450,8320529-8320648,
8320731-8320849,8320964-8321036,8321112-8321231,
8321538-8321606,8321756-8321926,8322004-8322051,
8322192-8322333,8323244-8323341,8323684-8323828,
8323928-8324013,8324112-8324222,8324456-8324530,
8324836-8324901,8325036-8325224,8325315-8325425,
8326616-8326696,8327192-8327371
Length = 1385
Score = 30.3 bits (65), Expect = 0.31
Identities = 19/50 (38%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
Frame = +2
Query: 38 VAFALIAMFAIVAVNSQE--NGGDSPDGEVAPGVDPVKVVDEDHGVNIVD 181
+A A+I +VAV+ Q+ +G S +G+ V P+KV ++ GVNI+D
Sbjct: 253 MAKAVIFPLPLVAVSYQQLIHGCSSANGDAL--VSPLKVWEQSFGVNIID 300
>02_04_0064 -
19375497-19375580,19375659-19375733,19376359-19376514,
19377016-19377093,19377328-19377428,19377570-19377717,
19378172-19378316,19378803-19378906,19380257-19380385,
19380526-19380636,19380734-19380863,19381915-19382034,
19382360-19382481,19382965-19383048,19383241-19383357,
19383442-19383522,19384138-19384197,19384398-19384440,
19384528-19384626,19385353-19385564,19385964-19386091,
19386246-19386396
Length = 825
Score = 28.3 bits (60), Expect = 1.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 163 MIFIHNFHWINAGGDFAIG 107
++F+ NFHW N+ D+ +G
Sbjct: 747 LVFVFNFHWSNSYFDYRVG 765
>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
Length = 1112
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/39 (25%), Positives = 20/39 (51%)
Frame = +2
Query: 47 ALIAMFAIVAVNSQENGGDSPDGEVAPGVDPVKVVDEDH 163
A++ ++++V +GGD D + P + D+DH
Sbjct: 1012 AIVELYSVVQPEPSHDGGDDDDDSESVPATPCQSEDDDH 1050
>06_02_0017 - 10649527-10651183,10651264-10652363
Length = 918
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = -3
Query: 280 IIYYRIKLTFRSHL*DYISLL--FAAITVLATGFAVNNVNAMIFIHNFHWINAGGDFAIG 107
II + K ++H + LL FA IT A G + +V+ I++ AGG
Sbjct: 445 IIMVQSKHVLKNHTLEAAMLLDLFALITAYAAG-SCRDVSTSIYVVAL----AGGVLVYV 499
Query: 106 TVPAVFLRVDSYNRKHSDQCKSDRK 32
+ +F +D+ + ++ D + D+K
Sbjct: 500 VIHIIFFTLDNMDNEYHDPDEEDKK 524
>05_04_0333 +
20333243-20333329,20335048-20335110,20335276-20335359,
20335720-20335827,20335969-20336141,20337135-20337246,
20337468-20337548,20337635-20337697,20337779-20337880,
20338070-20338194,20338317-20338527,20338625-20338699,
20338990-20339043
Length = 445
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 71 VAVNSQENGGDSPDGEVAPGVDPVKVVDE 157
+A S E D P+ E+ PG+D + VDE
Sbjct: 351 IAFVSTEAETDHPESELKPGIDLLGQVDE 379
>05_03_0407 +
13582595-13582681,13583067-13583129,13583289-13583372,
13583757-13583864,13584018-13584190,13585190-13585301,
13585424-13585504,13585611-13585673,13585764-13585865,
13586063-13586187,13586316-13586526,13586614-13586688,
13586950-13587003
Length = 445
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 71 VAVNSQENGGDSPDGEVAPGVDPVKVVDE 157
+A S E D+P E+ PG+D + VDE
Sbjct: 351 IAFVSTEAETDNPQSELKPGIDLLGQVDE 379
>03_06_0121 - 31806498-31807220
Length = 240
Score = 26.2 bits (55), Expect = 5.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 92 NGGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPGGQYRDGGE 217
+G +G+V G + + D+ G DG PG + DGG+
Sbjct: 109 DGDRGGEGDVETGEEEEEEDDDGDGYIADDGLPGDEDDDGGD 150
>06_01_0452 +
3198475-3198962,3199062-3199191,3199332-3199497,
3199765-3199883,3200056-3200136,3200236-3200322,
3200644-3200715,3200791-3200859,3201349-3201426,
3201540-3201680,3202333-3202386,3202465-3202581
Length = 533
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 41 AFALIAMFAIVAVNSQENGGDSPDGEVAPGVDPVKVVDED 160
A A++ +FA+VAV + D D EV +D + VDE+
Sbjct: 9 AAAVLLLFAVVAVARLDLDDDGDDSEV---LDELLAVDEE 45
>04_04_1324 + 32659752-32661972,32662067-32662761
Length = 971
Score = 25.8 bits (54), Expect = 6.7
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Frame = +2
Query: 71 VAVNSQENGG--DSPDGEVAPGVDPVKVVDEDHGVNIVDGEP 190
++V+S + G DS PG DP + D N V GEP
Sbjct: 438 LSVSSSDAGSSTDSTSDSDTPGGDPKEPAAVDDSKNAVPGEP 479
>04_03_0432 -
15861997-15862096,15862449-15862519,15862612-15862774,
15865311-15865535,15866156-15866403,15866489-15866618,
15866716-15866975
Length = 398
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/20 (60%), Positives = 12/20 (60%)
Frame = -3
Query: 160 IFIHNFHWINAGGDFAIGTV 101
IF H IN GG FAIG V
Sbjct: 255 IFAHCLDTINGGGIFAIGNV 274
>09_02_0355 - 7727082-7727323,7728036-7728126
Length = 110
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +2
Query: 110 DGEVAPGVDPVKVVDEDHGV 169
DGE+ P +P KVV D GV
Sbjct: 70 DGELPPWANPTKVVIMDDGV 89
>06_03_0284 - 19155236-19155400,19155831-19156046,19158387-19158596
Length = 196
Score = 25.4 bits (53), Expect = 8.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 140 VKVVDEDHGVNIVDGEPG 193
VK + DH + ++DG+PG
Sbjct: 132 VKFIGGDHMLKVIDGQPG 149
>03_05_1131 - 30606808-30607042,30607141-30607664
Length = 252
Score = 25.4 bits (53), Expect = 8.9
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 65 AIVAVNSQENGGDSPDGE-VAPGVDPVKVVDED 160
A++A ++GG DGE V P VDP + D D
Sbjct: 88 AVLARMEADDGGGGGDGEDVIPVVDPDGLPDAD 120
>02_05_1104 +
34146610-34146614,34147108-34147231,34147480-34147514,
34149924-34150269
Length = 169
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 77 VNSQENGGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPGGQYRDG 211
V + E GG + DG P V D + DGE GG DG
Sbjct: 107 VENGEGGGAAGDGANTPTVKAWWAKDGEGAGAAGDGEGGGAADDG 151
>02_05_1101 +
34122061-34122065,34122559-34122682,34122931-34122965,
34125375-34125720
Length = 169
Score = 25.4 bits (53), Expect = 8.9
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +2
Query: 77 VNSQENGGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPGGQYRDG 211
V + E GG + DG P V D + DGE GG DG
Sbjct: 107 VENGEGGGAAGDGANTPTVKAWWAKDGEGAGAAGDGEGGGAADDG 151
>01_01_0024 - 185516-185676,186459-186735
Length = 145
Score = 25.4 bits (53), Expect = 8.9
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +2
Query: 155 EDHGVNIVDGEPGGQYRDG 211
E G +VDGE GG Y DG
Sbjct: 79 ERRGRALVDGEGGGAYLDG 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,213,787
Number of Sequences: 37544
Number of extensions: 109245
Number of successful extensions: 363
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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