Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23c24
         (306 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X06614-1|CAA29829.1|  462|Homo sapiens protein ( Human mRNA for ...    27   8.1  
X06538-1|CAA29787.1|  432|Homo sapiens protein ( Human mRNA for ...    27   8.1  
U41743-1|AAB00113.1|  520|Homo sapiens nucleophosmin-retinoic ac...    27   8.1  
U41742-1|AAB00112.1|  563|Homo sapiens nucleophosmin-retinoic ac...    27   8.1  
S50916-1|AAB19602.2|  416|Homo sapiens retinoic acid receptor al...    27   8.1  
M73779-1|AAA60126.1|  797|Homo sapiens PML-RAR protein protein.        27   8.1  
CR457438-1|CAG33719.1|  462|Homo sapiens RARA protein.                 27   8.1  
BC071733-1|AAH71733.1|  457|Homo sapiens retinoic acid receptor,...    27   8.1  
BC008727-1|AAH08727.1|  462|Homo sapiens retinoic acid receptor,...    27   8.1  
AF088895-1|AAD05222.1|  462|Homo sapiens retinoic acid receptor ...    27   8.1  

>X06614-1|CAA29829.1|  462|Homo sapiens protein ( Human mRNA for
           receptor of retinoic acid. ).
          Length = 462

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 143 KVVDEDHGVNIVDGEPGGQYRDGG 214
           ++++   G++ + G+PGG  RDGG
Sbjct: 412 EMLENSEGLDTLSGQPGGGGRDGG 435


>X06538-1|CAA29787.1|  432|Homo sapiens protein ( Human mRNA for
           retinoic acid receptor. ).
          Length = 432

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 143 KVVDEDHGVNIVDGEPGGQYRDGG 214
           ++++   G++ + G+PGG  RDGG
Sbjct: 382 EMLENSEGLDTLSGQPGGGGRDGG 405


>U41743-1|AAB00113.1|  520|Homo sapiens nucleophosmin-retinoic acid
           receptor alpha fusion protein NPM-RAR short form
           protein.
          Length = 520

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 143 KVVDEDHGVNIVDGEPGGQYRDGG 214
           ++++   G++ + G+PGG  RDGG
Sbjct: 470 EMLENSEGLDTLSGQPGGGGRDGG 493


>U41742-1|AAB00112.1|  563|Homo sapiens nucleophosmin-retinoic acid
           receptor alpha fusion protein NPM-RAR long form protein.
          Length = 563

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 143 KVVDEDHGVNIVDGEPGGQYRDGG 214
           ++++   G++ + G+PGG  RDGG
Sbjct: 513 EMLENSEGLDTLSGQPGGGGRDGG 536


>S50916-1|AAB19602.2|  416|Homo sapiens retinoic acid receptor alpha
           protein.
          Length = 416

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 143 KVVDEDHGVNIVDGEPGGQYRDGG 214
           ++++   G++ + G+PGG  RDGG
Sbjct: 366 EMLENSEGLDTLSGQPGGGGRDGG 389


>M73779-1|AAA60126.1|  797|Homo sapiens PML-RAR protein protein.
          Length = 797

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 143 KVVDEDHGVNIVDGEPGGQYRDGG 214
           ++++   G++ + G+PGG  RDGG
Sbjct: 747 EMLENSEGLDTLSGQPGGGGRDGG 770


>CR457438-1|CAG33719.1|  462|Homo sapiens RARA protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 143 KVVDEDHGVNIVDGEPGGQYRDGG 214
           ++++   G++ + G+PGG  RDGG
Sbjct: 412 EMLENSEGLDTLSGQPGGGGRDGG 435


>BC071733-1|AAH71733.1|  457|Homo sapiens retinoic acid receptor,
           alpha protein.
          Length = 457

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 143 KVVDEDHGVNIVDGEPGGQYRDGG 214
           ++++   G++ + G+PGG  RDGG
Sbjct: 407 EMLENSEGLDTLSGQPGGGGRDGG 430


>BC008727-1|AAH08727.1|  462|Homo sapiens retinoic acid receptor,
           alpha protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 143 KVVDEDHGVNIVDGEPGGQYRDGG 214
           ++++   G++ + G+PGG  RDGG
Sbjct: 412 EMLENSEGLDTLSGQPGGGGRDGG 435


>AF088895-1|AAD05222.1|  462|Homo sapiens retinoic acid receptor
           alpha protein.
          Length = 462

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +2

Query: 143 KVVDEDHGVNIVDGEPGGQYRDGG 214
           ++++   G++ + G+PGG  RDGG
Sbjct: 412 EMLENSEGLDTLSGQPGGGGRDGG 435


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 33,130,627
Number of Sequences: 237096
Number of extensions: 562617
Number of successful extensions: 1081
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)