Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23c24
(306 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical pr... 29 0.64
AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical ... 27 2.0
Z93381-3|CAB07606.1| 362|Caenorhabditis elegans Hypothetical pr... 27 2.6
Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical pr... 26 4.5
AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen pro... 26 4.5
Z74033-2|CAA98476.2| 419|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z74033-1|CAA98475.2| 460|Caenorhabditis elegans Hypothetical pr... 26 6.0
Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical pr... 25 7.9
Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical pr... 25 7.9
U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protei... 25 7.9
>Z46791-5|CAA86755.2| 948|Caenorhabditis elegans Hypothetical
protein C09G5.6 protein.
Length = 948
Score = 29.1 bits (62), Expect = 0.64
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 95 GGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPG 193
G PDG PGV +D + GVN DG+PG
Sbjct: 429 GERGPDG--TPGVPGEDGIDGEQGVNGQDGQPG 459
>AF036687-2|AAB88311.2| 2224|Caenorhabditis elegans Hypothetical
protein C08G9.2 protein.
Length = 2224
Score = 27.5 bits (58), Expect = 2.0
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 101 DSPDGEVAPGVDPVKVVDEDHGVNIVDGEPGGQYRDG 211
D+ G PG + +K + E +G+ G+P DG
Sbjct: 1874 DNMHGVCCPGANSIKSIGEHNGLTCPHGDPFSSLADG 1910
>Z93381-3|CAB07606.1| 362|Caenorhabditis elegans Hypothetical
protein F28G4.3 protein.
Length = 362
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 202 VLATGFAVNNVN-AMIFIHNFHWINAGGDFAIGTVPAVFLRVDSYNRKHSD 53
V + + N++N AMI IH+F+ +N G + + ++ L + + K D
Sbjct: 107 VFVSAISENHLNQAMISIHSFYKLNPTGRYILYSLNLTELNIKTLKAKFKD 157
>Z73427-4|CAA97802.3| 601|Caenorhabditis elegans Hypothetical
protein F58B3.4 protein.
Length = 601
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +2
Query: 86 QENGGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPGGQYRDGGEK 220
++NG DS DGE VKV D+D + + + G D EK
Sbjct: 438 EKNGSDSSDGEY------VKVDDDDEEIGVKQKKKKGSDDDEDEK 476
>AC024751-12|ABF71717.1| 301|Caenorhabditis elegans Collagen
protein 47 protein.
Length = 301
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +2
Query: 107 PDGEVAPGVDPVKVVDEDHGVNIVDGEPGGQYRD 208
P + APG D + + G+N +DGE G D
Sbjct: 85 PGSKGAPGADGLDGIPGSRGLNGMDGEAGHSNMD 118
>Z74033-2|CAA98476.2| 419|Caenorhabditis elegans Hypothetical
protein F38B7.1b protein.
Length = 419
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +2
Query: 80 NSQENGGDSPDGEVAPGVD 136
+S ++G +SP+G +PG+D
Sbjct: 294 SSNDSGSESPNGSFSPGLD 312
>Z74033-1|CAA98475.2| 460|Caenorhabditis elegans Hypothetical
protein F38B7.1a protein.
Length = 460
Score = 25.8 bits (54), Expect = 6.0
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = +2
Query: 80 NSQENGGDSPDGEVAPGVD 136
+S ++G +SP+G +PG+D
Sbjct: 335 SSNDSGSESPNGSFSPGLD 353
>Z95621-2|CAB09131.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 95 GGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPGGQYRDG 211
GG S G P P D + G DG+PGG +DG
Sbjct: 190 GGGSGPGPAGPAGPPGP--DGNPGSAGADGQPGGPGQDG 226
>Z78019-9|CAB01457.1| 330|Caenorhabditis elegans Hypothetical
protein ZK863.2 protein.
Length = 330
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +2
Query: 95 GGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPGGQYRDG 211
GG S G P P D + G DG+PGG +DG
Sbjct: 190 GGGSGPGPAGPAGPPGP--DGNPGSAGADGQPGGPGQDG 226
>U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protein
110 protein.
Length = 304
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 89 ENGGDSPDGEVAPGVDPVKVVDEDHGVNIVDGEPGGQYRDG 211
E+G D GEV D D G + G+PG RDG
Sbjct: 202 EDGADGEPGEVDTSDVGPPGDDGDEGQSGEAGQPGNDGRDG 242
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,413,971
Number of Sequences: 27780
Number of extensions: 92838
Number of successful extensions: 311
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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