Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23c22
         (587 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   1.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.7  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    23   2.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.8  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   9.0  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.0  

>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = +1

Query: 520 HHDSYWGHVLRTNSHHYCW 576
           H  +YW   +  N HH+ W
Sbjct: 194 HRVAYWREDIGINLHHWHW 212


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 504 ASSSATMHSSKTPKFPMPPQC 442
           +S    +H +   K P PPQC
Sbjct: 548 SSGDDELHRASLSKTPQPPQC 568


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 353 AGQYDKTGEYPWPVVKKAWEVGLMNGHIPEHCGGIGNFGVFEECI 487
           +G+YD T  YP+ V    W  G+    +P + G   +  V  E I
Sbjct: 60  SGEYDHTKNYPFDV--DQWR-GMTFVTVPRYKGVPSSLNVISEKI 101


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 543  VPPIAVVMPVHPNASSSATMH 481
            VPP A V+ V  + SSS  +H
Sbjct: 1403 VPPSAPVLYVTSSTSSSILLH 1423


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 543  VPPIAVVMPVHPNASSSATMH 481
            VPP A V+ V  + SSS  +H
Sbjct: 1399 VPPSAPVLYVTSSTSSSILLH 1419


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 353 AGQYDKTGEYPWPV 394
           +G+YD+T  YP  V
Sbjct: 61  SGEYDRTKNYPLDV 74


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 353 AGQYDKTGEYPWPV 394
           +G+YD T  YP+ V
Sbjct: 57  SGEYDHTKNYPFDV 70


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,943
Number of Sequences: 438
Number of extensions: 3624
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)