Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23c19
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 29 2.6
05_02_0052 + 6124880-6124956,6125097-6125250,6125327-6125920,612... 29 2.6
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 29 3.4
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389... 28 4.6
06_03_0020 + 15515768-15517696 28 4.6
09_04_0355 + 16922863-16924224 28 6.0
07_03_1045 + 23528768-23528879,23528979-23530399 28 6.0
02_05_1348 + 35840197-35841291 28 6.0
02_01_0090 - 637141-640263 28 6.0
01_05_0176 - 18957676-18958067,18958139-18958242,18958358-189584... 28 6.0
12_02_0939 + 24581356-24581628 27 8.0
12_02_0219 + 15822050-15824896 27 8.0
11_04_0014 - 12253341-12253358,12253520-12253729,12254388-122545... 27 8.0
10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392 27 8.0
08_02_1611 - 28224239-28224511 27 8.0
08_02_0943 + 22849939-22850211 27 8.0
06_01_0080 + 644021-645463 27 8.0
04_01_0495 - 6515982-6516254 27 8.0
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989... 27 8.0
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 29.1 bits (62), Expect = 2.6
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = -2
Query: 471 YAASFSVCIWTTLMSRNDPLF---PTSVMA-LRRGTGVAAAPWANTVSPDLR 328
+ + F +C+WT R+D +F P S+ A L+RG + WA +PD R
Sbjct: 341 FQSFFLLCLWTLWNHRHDVVFRERPPSISACLQRGLSESTL-WAAMFTPDDR 391
>05_02_0052 +
6124880-6124956,6125097-6125250,6125327-6125920,
6126344-6126757,6126835-6126846
Length = 416
Score = 29.1 bits (62), Expect = 2.6
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = -2
Query: 552 PSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMALRRGTG 373
PS++ R+F+A T + +S + AA+ + C T + L P A RR +G
Sbjct: 97 PSSSSFRSFSAGTTTTTTSRDDNSSLMLAAAAASCHHQTTEVSSQILLPRPGQAARRSSG 156
Query: 372 VAAAPWANT 346
A A T
Sbjct: 157 GHGAAAAAT 165
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 28.7 bits (61), Expect = 3.4
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 346 RVRPGRGRHAGASSQC 393
R+RPGRG HA S++C
Sbjct: 35 RLRPGRGTHAACSTKC 50
>06_03_0157 +
17337641-17337896,17337975-17338082,17338643-17338908,
17339933-17340021,17340095-17340198,17340403-17340508,
17340600-17340675,17340772-17340883,17341719-17342250,
17343097-17343131,17343924-17343984,17344054-17344132,
17344266-17344349
Length = 635
Score = 28.3 bits (60), Expect = 4.6
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 128 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQ 274
+KL+ + +I+P + L FG + SAF + +D F Y QSL +
Sbjct: 232 IKLHSKLERKKMHRIIP--NRLTFGSVRSAFDDIDADDPDFLYIQSLGE 278
>06_03_0020 + 15515768-15517696
Length = 642
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +2
Query: 353 AQGAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSL 514
A G A PV + + + G+ D +++H H P C +F S SL
Sbjct: 60 AAGLTADPVAVSRLIKLCVRHGTPSDGRLIHRHVFGGGDVAAPSCSSLFVSNSL 113
>09_04_0355 + 16922863-16924224
Length = 453
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +1
Query: 460 GCGICNPGMQGHIQIGIVVYGRERPQISSRRSLRRHS 570
GCG N G + GIV +GR+ + S+ S+RR S
Sbjct: 210 GCGTMNVGSLNNAS-GIVGFGRDPLSLVSQLSIRRFS 245
>07_03_1045 + 23528768-23528879,23528979-23530399
Length = 510
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2
Query: 501 LNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMALRRGTGVAA 364
+ +S+ S + Y A FS+ + + +FP V AL GVAA
Sbjct: 382 IGLSIASTLAYVAFFSIGLGPITWVYSSEIFPLQVRALGCSLGVAA 427
>02_05_1348 + 35840197-35841291
Length = 364
Score = 27.9 bits (59), Expect = 6.0
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 358 GRGRHAGASSQCHDRSRKKWIVARHQSRPY--AHRKGC-GICNPGMQG 492
GR ASS +++++ R +RPY RK C + +P +QG
Sbjct: 255 GRRAFDAASSDSESEDHQRFLLLRDWARPYLAGDRKRCFALADPALQG 302
>02_01_0090 - 637141-640263
Length = 1040
Score = 27.9 bits (59), Expect = 6.0
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Frame = +2
Query: 353 AQGAAATPVPLLNAMTEVGKSGSLRDIKVV----HMHTEKDA 466
A+ AAA P + EVG G LR +V +MH E DA
Sbjct: 748 AEAAAAAPELTAEVLKEVGLLGRLRHRNIVRLLGYMHNEADA 789
>01_05_0176 -
18957676-18958067,18958139-18958242,18958358-18958483,
18959495-18959628,18959757-18959894,18960835-18960964,
18961316-18961357,18964741-18965024
Length = 449
Score = 27.9 bits (59), Expect = 6.0
Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 2/97 (2%)
Frame = -2
Query: 555 RPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMALRRGT 376
R AT A+ + + S H A S ++ S + P +V A+ T
Sbjct: 3 RGGATAASAARALRSRLIPDTSHHPATALAPIASPRSSSSSSSSSAPTIAAAVPAVAEAT 62
Query: 375 GVAAAP--WANTVSPDLRHFSNASFAVEYSGFLSRGC 271
AAA A +VS LRH+ F + + +GC
Sbjct: 63 AAAAAVSRQAGSVSDALRHYGRCYFELSKARLSFQGC 99
>12_02_0939 + 24581356-24581628
Length = 90
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 358 GRGRHAGASSQCHDRSRKKWIVARHQSRPYAHRKGCG 468
G GR A A + +RSR++W R R R+G G
Sbjct: 19 GGGREAAAVERAAERSRRRWGGRRRGRRQRWWRRGRG 55
>12_02_0219 + 15822050-15824896
Length = 948
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -2
Query: 561 SERPSATDLRTFAAINNDTDLNMSLHSGVTYAA 463
S+ PSA D TFA T L SG+ YAA
Sbjct: 68 SKSPSAIDQTTFARYVERTAFERPLTSGLAYAA 100
>11_04_0014 -
12253341-12253358,12253520-12253729,12254388-12254523,
12254631-12254752,12254789-12254842,12254872-12255161,
12255737-12255948,12256008-12256475,12256560-12256856,
12257467-12258329,12258417-12258490,12258616-12258650,
12259024-12259087,12259452-12259733,12259870-12259946,
12260045-12260325
Length = 1160
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -3
Query: 404 LRSWH*EEAPAWRPRPGRTRSVRI*DISQTPPLRSNIQASCPG 276
L SW P W G+ + + + D P + QA CPG
Sbjct: 160 LSSWMDGCEPGWACTVGKEQKINLQDAKDIPYRALDCQACCPG 202
>10_08_0887 - 21311301-21311828,21312001-21312110,21312215-21312392
Length = 271
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -3
Query: 308 LRSNIQASCPGAATTIVYT*SNFYPI 231
+R N SC G T++ T N+YP+
Sbjct: 97 IRCNKDPSCSGNIETVIITDMNYYPV 122
>08_02_1611 - 28224239-28224511
Length = 90
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 358 GRGRHAGASSQCHDRSRKKWIVARHQSRPYAHRKGCG 468
G GR A A + +RSR++W R R R+G G
Sbjct: 19 GGGREAAAVERAAERSRRRWGGRRRGRRQRWWRRGRG 55
>08_02_0943 + 22849939-22850211
Length = 90
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 358 GRGRHAGASSQCHDRSRKKWIVARHQSRPYAHRKGCG 468
G GR A A + +RSR++W R R R+G G
Sbjct: 19 GGGREAAAVERAAERSRRRWGGRRRGRRQRWWRRGRG 55
>06_01_0080 + 644021-645463
Length = 480
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 395 MTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFMAANVRKSVAE 550
+T +GK GS +K+VH E + E D+ +SV + +++ +E
Sbjct: 173 VTYIGKGGSGNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSE 224
>04_01_0495 - 6515982-6516254
Length = 90
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 358 GRGRHAGASSQCHDRSRKKWIVARHQSRPYAHRKGCG 468
G GR A A + +RSR++W R R R+G G
Sbjct: 19 GGGREAAAVERAAERSRRRWGGRRRGRRQRWWRRGRG 55
>01_07_0009 -
40397276-40397534,40397637-40398745,40398834-40398932,
40399043-40399272,40399534-40399585,40399679-40399865,
40399987-40400193,40400283-40400449,40400804-40401094,
40401166-40401636
Length = 1023
Score = 27.5 bits (58), Expect = 8.0
Identities = 15/32 (46%), Positives = 16/32 (50%)
Frame = -2
Query: 561 SERPSATDLRTFAAINNDTDLNMSLHSGVTYA 466
S+ PSA D TFA T L SGV YA
Sbjct: 149 SKTPSAIDQMTFARYAERTAFERPLTSGVAYA 180
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,610,391
Number of Sequences: 37544
Number of extensions: 327552
Number of successful extensions: 954
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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