Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23c19
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical pr...    60   8e-10
Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein ( C.ele...    29   3.1  
U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation fact...    29   3.1  
Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical pr...    28   5.4  
Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    28   5.4  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    28   5.4  
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    28   5.4  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF016421-11|AAM45373.2|  417|Caenorhabditis elegans Hypothetical...    27   9.5  

>U28928-9|AAN63431.1|  471|Caenorhabditis elegans Hypothetical
           protein C44B7.10 protein.
          Length = 471

 Score = 60.5 bits (140), Expect = 8e-10
 Identities = 34/93 (36%), Positives = 50/93 (53%)
 Frame = +2

Query: 284 RKPEYSTAKEAFEKCLKSGLTVFAQGAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKD 463
           + P+  +  EA  + +KSG  VF  G AATP PLL +++E   + +L  IK+ H+H E  
Sbjct: 36  KSPKVVSLAEA-TRDIKSGDNVFVHGIAATPTPLLQSLSEHAVANNLNKIKLHHLHLEGA 94

Query: 464 AAYVTPECKDIFRSVSLFMAANVRKSVAEGRSD 562
             +     +D  RS SLF   N+R  V  G +D
Sbjct: 95  TPWTAEGVRDRIRSNSLFTGHNLRACVNNGIAD 127


>Z12116-1|CAA78102.1|  402|Caenorhabditis elegans protein (
           C.elegans mRNA for eIF-4A homologue. ).
          Length = 402

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = -2

Query: 570 GMASERPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMA 391
           G   E+PSA   R         D+     SG    A+FSV I   +    DP     VMA
Sbjct: 46  GFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI-DHEDPHVQALVMA 104

Query: 390 LRR 382
             R
Sbjct: 105 PTR 107


>U13876-3|AAA21170.1|  402|Caenorhabditis elegans Initiation factor
           protein 1, isoforma protein.
          Length = 402

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/63 (31%), Positives = 24/63 (38%)
 Frame = -2

Query: 570 GMASERPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMA 391
           G   E+PSA   R         D+     SG    A+FSV I   +    DP     VMA
Sbjct: 46  GFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI-DHEDPHVQALVMA 104

Query: 390 LRR 382
             R
Sbjct: 105 PTR 107


>Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +2

Query: 128 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQP 277
           + ++   RM+  T I P+ +  +  + +S + + K+ RSY T T++ S+P
Sbjct: 329 IPMSTTRRMTTTT-IRPKTTKKYLSRSTSKYDAKKTTRSYQTTTRTTSKP 377


>Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +2

Query: 128 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQP 277
           + ++   RM+  T I P+ +  +  + +S + + K+ RSY T T++ S+P
Sbjct: 329 IPMSTTRRMTTTT-IRPKTTKKYLSRSTSKYDAKKTTRSYQTTTRTTSKP 377


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +2

Query: 266  LSQPLDRKPEYSTAKEAFEKCLKSGLTVFAQGAAATPVPLLNAMTEVGKSGSLRDIKVVH 445
            + +P DR   ++ + E  E      L    + A A+PVP  ++   V ++ +   +   H
Sbjct: 4037 VQEPEDRPENFAESHEKTEATSDENLFESDKYAPASPVPSEDSSNRVIETTTTTTVTREH 4096

Query: 446  MHTEKDAAYV 475
               E D +YV
Sbjct: 4097 FEPEDDHSYV 4106


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +2

Query: 266  LSQPLDRKPEYSTAKEAFEKCLKSGLTVFAQGAAATPVPLLNAMTEVGKSGSLRDIKVVH 445
            + +P DR   ++ + E  E      L    + A A+PVP  ++   V ++ +   +   H
Sbjct: 4037 VQEPEDRPENFAESHEKTEATSDENLFESDKYAPASPVPSEDSSNRVIETTTTTTVTREH 4096

Query: 446  MHTEKDAAYV 475
               E D +YV
Sbjct: 4097 FEPEDDHSYV 4106


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -1

Query: 538 FADVRGHKQRYRSEYVLAFR--GYICRILFGVHMDDFDVSQRSTFSYFGHGIEKRHRRGG 365
           F  ++G  +++RSE+VLA    G I + L       FD  +  T       +E+  R  G
Sbjct: 420 FNKMKGVYEKFRSEHVLALTKLGDIQKQLEASEKSKFDKDEEIT--ALNRKVEEAQREAG 477

Query: 364 RALGE-HGQSG 335
           RAL +  G +G
Sbjct: 478 RALTKAEGDAG 488


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -1

Query: 538 FADVRGHKQRYRSEYVLAFR--GYICRILFGVHMDDFDVSQRSTFSYFGHGIEKRHRRGG 365
           F  ++G  +++RSE+VLA    G I + L       FD  +  T       +E+  R  G
Sbjct: 420 FNKMKGVYEKFRSEHVLALTKLGDIQKQLEASEKSKFDKDEEIT--ALNRKVEEAQREAG 477

Query: 364 RALGE-HGQSG 335
           RAL +  G +G
Sbjct: 478 RALTKAEGDAG 488


>AF101312-1|AAC69221.3|  813|Caenorhabditis elegans Hypothetical
           protein F56E10.2 protein.
          Length = 813

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 42  YIYWLLGVGARVLSLTTNKIVITTSLCFV 128
           +I+W++G G    S     I I + LCF+
Sbjct: 11  FIFWIIGYGTDYCSYRIVAIEILSGLCFI 39


>AF016421-11|AAM45373.2|  417|Caenorhabditis elegans Hypothetical
           protein F44E7.8 protein.
          Length = 417

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = +2

Query: 191 LHFGKLS----SAFL--SVKSDRSYFTYTQSLSQPLDRKPEYSTAKEAFEKCLKSGLT 346
           +HFG LS    +AF   SV  D+ Y     S    +D+   Y      ++KCL+ G+T
Sbjct: 36  VHFGVLSCRACAAFFRRSVVMDKKYSCRKASQGCRIDKSERYLCRLCRYKKCLQLGMT 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,025,989
Number of Sequences: 27780
Number of extensions: 267885
Number of successful extensions: 782
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 782
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)