Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt23c08
(614 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 30 0.31
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.8
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.8
SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase Ubp16|Schizo... 27 2.8
SPAC6C3.06c |||P-type ATPase, calcium transporting|Schizosacchar... 25 6.6
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 6.6
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 25 8.7
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.7
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.7
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 29.9 bits (64), Expect = 0.31
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Frame = +2
Query: 164 LLNAGHE--VTYITTSPL-KEKPKKNYREIDVSANTEIFKGEEMIDIACLMDNKVEMNHI 334
+LN E +T++ T L ++ P + ++ S N IFK +E++ CL ++ +
Sbjct: 216 ILNDAREFSLTFLNTLKLARDFPNEIRSYLEASKNFNIFKEKEILRNICL--DECYLKAY 273
Query: 335 FDLQNITIANALMTFENEDVKKLIQNTNESF 427
F +++ + T + D ++Q SF
Sbjct: 274 FSAEDVKVTTPFETLQQFDGDNILQQWKLSF 304
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/48 (25%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +2
Query: 182 EVTYITTSPLKEKPKKNYREIDVSANTEIFK-GEEMIDIACLMDNKVE 322
E TY++ S + +KNY+EI + + ++ + +E++++ +M + V+
Sbjct: 168 EETYVSDSEEEPISQKNYQEISIWKSHDVIRVKQEVVELIYVMRSLVQ 215
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +2
Query: 416 NESFDVVIADYIDTEVYAAFSALYGCPLIWLSSLRTNWQTL 538
+E+ I D I E Y L G P++ S NWQ L
Sbjct: 330 SETVREAIIDSIQLEGYVDLQKLSGSPVLVTLSFINNWQNL 370
>SPCC1682.12c |ubp16||ubiquitin C-terminal hydrolase
Ubp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +1
Query: 433 GHCRLHRYRSLCRFLSTVWMSFDMAVFAED*LADSTFDRRTNK 561
G R Y S C+ + VW+ FD +D +++S+ DR N+
Sbjct: 382 GSTRSGHYYSFCKSSNGVWLKFD-----DDFVSNSSIDRVLNQ 419
>SPAC6C3.06c |||P-type ATPase, calcium
transporting|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1033
Score = 25.4 bits (53), Expect = 6.6
Identities = 8/27 (29%), Positives = 15/27 (55%)
Frame = -3
Query: 420 SFVFCINFFTSSFSNVIKAFAIVIFCR 340
S FCI + + F +++ + V+ CR
Sbjct: 718 SMEFCIGYLQNEFIDIVSDLSSVVICR 744
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 6.6
Identities = 12/27 (44%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = +2
Query: 383 NEDVKKLI-QNTNESFDVVIADYIDTE 460
NE+V KL+ Q+TN+ + +DY +TE
Sbjct: 584 NENVAKLLAQSTNKHVATLFSDYQETE 610
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 25.0 bits (52), Expect = 8.7
Identities = 23/97 (23%), Positives = 39/97 (40%)
Frame = -3
Query: 372 IKAFAIVIFCRSNMWFISTLLSIKQAISIISSPLKISVFALTSISRXXXXXFSLRGDVVM 193
IK F + F SN S + ++++ + SPL F L R +
Sbjct: 624 IKIFYVAAFAVSNF---SNMRHKERSVRKVFSPLLGETFELVREDRNYRFLAEKVCHRPL 680
Query: 192 *VTSCPALRRWLTTLAPRILRLLNGKAVITNTV*P*T 82
+ R W+ +P+ ++ GK+V NT+ P T
Sbjct: 681 IIACHAESRNWIWNHSPKPIQKFWGKSVELNTLGPVT 717
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 8.7
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +2
Query: 380 ENEDVKKLIQNTNESFDVVIADYIDTEVYAAFSALYGCPLIWLSSLRTNWQTLRLIDEPT 559
E +D +++ +E+ + A SAL + S+ W T RLI + T
Sbjct: 67 EKKDKPIIVEAASEATSEEACNSSKERQLPALSALSALSTLTTSANDDLW-TARLIWQST 125
Query: 560 NPAYTVSSISMNYPPLN 610
N +S S NY LN
Sbjct: 126 NDTKLDNSPSSNYTDLN 142
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 8.7
Identities = 21/77 (27%), Positives = 32/77 (41%)
Frame = +2
Query: 380 ENEDVKKLIQNTNESFDVVIADYIDTEVYAAFSALYGCPLIWLSSLRTNWQTLRLIDEPT 559
E +D +++ +E+ + A SAL + S+ W T RLI + T
Sbjct: 67 EKKDKPIIVEAASEATSEEACNSSKERQLPALSALSALSTLTTSANDDLW-TARLIWQST 125
Query: 560 NPAYTVSSISMNYPPLN 610
N +S S NY LN
Sbjct: 126 NDTKLDNSPSSNYTDLN 142
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,062
Number of Sequences: 5004
Number of extensions: 43584
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -