Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23c08
         (614 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0260 - 21350060-21350269,21350544-21350604,21350834-213509...    29   2.9  
03_02_1019 + 13244003-13245202,13245347-13245493,13245772-132460...    29   3.9  
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850...    28   6.8  

>02_04_0260 -
           21350060-21350269,21350544-21350604,21350834-21350901,
           21351274-21351483,21351684-21351724,21351923-21351972,
           21352084-21352172,21352265-21352339,21352539-21352656,
           21352689-21352771,21352854-21352970,21353857-21354074,
           21354184-21354241,21354356-21354508
          Length = 516

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 56  LCLIFLANQVQGYTVLV-ITALPFRSLNILGASVVSHLLNAGHEV 187
           + +IFL   VQG+ V + I+A+PF  L ++G  +   +    H+V
Sbjct: 310 MLIIFLLLNVQGWYVYIWISAVPFVMLLVVGTKLEHIITELAHQV 354


>03_02_1019 +
           13244003-13245202,13245347-13245493,13245772-13246099,
           13246930-13246994
          Length = 579

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = +2

Query: 341 LQNITIANALMTFENE------DVKKLIQNTNESFDVVIADYIDTEVYAAFSALYGCPLI 502
           ++ +T+AN  M    E      D    ++  +  F  + AD+ID+ V      LYGCP +
Sbjct: 245 VREVTLANLTMEGHPELPQGIRDCATSLKGLHVFFFTMEADHIDSLVNLRVLGLYGCPGM 304

Query: 503 WLSSLR 520
            L +LR
Sbjct: 305 ILRALR 310


>01_05_0431 -
           22084474-22084635,22084740-22084844,22084931-22085003,
           22085109-22085179,22085429-22085548,22085631-22085715,
           22085812-22085867,22085978-22086053,22086546-22086611,
           22086843-22087060
          Length = 343

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 122 FRSLNILGASVVSHLLNAGHEVT 190
           F  L I+GA + S+L+NAG +VT
Sbjct: 55  FLGLGIMGAPMASNLINAGCDVT 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,413,112
Number of Sequences: 37544
Number of extensions: 239136
Number of successful extensions: 563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)