Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23c08
         (614 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.59 
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    24   1.0  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    24   1.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.4  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = +2

Query: 347 NITIANALMTFENEDVKKLIQNTNESFDVVIADYIDTEVYAAFSALYGCPLIWLSSL 517
           N+ I+N LM F       +    N  ++  +   +  ++YA   +L+GC  IW  ++
Sbjct: 93  NLAISNFLMMFCMSPPMVI----NCYYETWVLGPLFCQIYAMLGSLFGCGSIWTMTM 145


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 458 EVYAAFSALYGCPLIWLSSL 517
           ++YA   +L+GC  IW  ++
Sbjct: 92  QIYAMLGSLFGCGSIWTMTM 111


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +2

Query: 458 EVYAAFSALYGCPLIWLSSL 517
           ++YA   +L+GC  IW  ++
Sbjct: 2   QIYAMLGSLFGCGSIWTMTM 21


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 18/74 (24%), Positives = 34/74 (45%)
 Frame = +2

Query: 143 GASVVSHLLNAGHEVTYITTSPLKEKPKKNYREIDVSANTEIFKGEEMIDIACLMDNKVE 322
           G  V++ L  +G+ +  I   PL  +   + +E+D+S N      + + D+A L    + 
Sbjct: 405 GLFVLNRLTLSGNAIASI--DPLAFRNCSDLKELDLSGNELTSVPDALRDLALLKTLDLG 462

Query: 323 MNHIFDLQNITIAN 364
            N I +  N +  N
Sbjct: 463 ENRISNFYNGSFRN 476


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,224
Number of Sequences: 438
Number of extensions: 3149
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)