Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt23c07
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    31   0.14 
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   3.0  
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    27   3.0  
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    27   3.0  
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc...    26   5.2  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   5.2  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   6.8  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      25   6.8  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    25   9.0  

>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 31.1 bits (67), Expect = 0.14
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 516 VSFSYIRYDCCSDSEKFAFHFDLRKHSTFVVSEANHD 406
           VSF+    D  S+SEKFA + DL ++  F V+  N D
Sbjct: 412 VSFTQTTTDTLSESEKFASNVDLDENFDFNVNVTNED 448


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 608 LVRFLNTPASMCLS**LASISSTF-KKYXESKCPFLIFVMT 489
           L R L  P  + LS  L+ ISS   K + ESK PFL++ ++
Sbjct: 454 LPRSLPRPFLLALSILLSIISSFLVKHWRESKVPFLVYFLS 494


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 592 TLLPLCVLVDDWLLFPALLKSI 527
           T++PLC  VD W +   LL+SI
Sbjct: 85  TIVPLCNNVDSWNVLTNLLRSI 106


>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 538 KVLEIEANHQLRHIEAGVFKNLTSLQQLSIS 630
           K+ E EANH+L +IE  + + LT + ++S+S
Sbjct: 776 KLQEKEANHELENIEK-IEEKLTEVDKVSLS 805


>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +3

Query: 12  AFWLDEQACKNIVDYFKQINVLSKFRNNVR 101
           A WL     +N+  Y+K I +L++FR +V+
Sbjct: 374 ALWLSNFDMENV--YYKLIGILNRFRKSVQ 401


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 256 VYISRGDLIEVYKELSHTILYP 321
           V+I  G   EVYKE   T LYP
Sbjct: 78  VFIHHGSFAEVYKEDDLTQLYP 99


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 412 VCFGNYECRMFPKIKVKCEFLRVRTTVITNIRKG 513
           + F +++C  F   KV C+ +R+ +  +    KG
Sbjct: 322 IFFNSFDCIFFSSTKVPCQLIRLPSDFVLCKMKG 355


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/37 (45%), Positives = 23/37 (62%)
 Frame = +1

Query: 205 SN*DMLLVHCLWLLLYNVYISRGDLIEVYKELSHTIL 315
           S+ D+L   C+W LL+  Y  RGD+ EV  +L  TIL
Sbjct: 889 SSQDLLSDDCVWKLLFTGY--RGDVREV--KLWKTIL 921


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 376 SPNNHPGLIPRAGRHSSLAGTGSCGTILCKLRS 278
           SPN++P L+P      S A   +  T L +LR+
Sbjct: 163 SPNSYPSLLPSTHSPHSPAPLSTMQTALMRLRT 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,517,472
Number of Sequences: 5004
Number of extensions: 50758
Number of successful extensions: 113
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)